←Back to structures
S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00486
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00486
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-130
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00095__D19-115
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zh5A00 | 2.40.128.710 | Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E | 0.75 | 69.0 | 6.36e-01 | 100.0% | 83.3% |
| 3hzpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 4.19e-01 | 71.7% | 91.3% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 4.16e-01 | 71.7% | 95.3% |
| 1swgC00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.63 | 54.0 | 5.13e-01 | 93.4% | 94.4% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.62 | 40.0 | 3.83e-01 | 73.6% | 56.0% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 52.0 | 3.45e-01 | 92.5% | 46.8% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 46.0 | 4.08e-01 | 79.2% | 86.5% |
| 3rqbA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.60 | 48.0 | 3.62e-01 | 87.7% | 50.0% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 43.0 | 3.90e-01 | 76.4% | 87.9% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 41.0 | 3.58e-01 | 71.7% | 92.5% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.58 | 45.0 | 4.32e-01 | 82.1% | 90.2% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.58 | 44.0 | 4.40e-01 | 82.1% | 89.4% |
| 3r87A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 41.0 | 3.81e-01 | 72.6% | 100.0% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.58 | 43.0 | 3.95e-01 | 77.4% | 87.5% |
| 3kuvB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 40.0 | 3.75e-01 | 74.5% | 91.0% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 44.0 | 4.21e-01 | 88.7% | 72.7% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 4.58e-01 | 88.7% | 89.9% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.56 | 49.0 | 4.16e-01 | 99.1% | 84.1% |
| 1sjwA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.77e-01 | 78.3% | 85.9% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 49.0 | 4.25e-01 | 97.2% | 70.5% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 29.0 | 3.70e-01 | 97.2% | 87.1% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 40.0 | 3.75e-01 | 75.5% | 93.9% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 42.0 | 4.49e-01 | 90.6% | 93.4% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 46.0 | 4.17e-01 | 93.4% | 70.5% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 37.0 | 4.22e-01 | 94.3% | 96.2% |
| 1w7cA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.94e-01 | 79.2% | 87.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.73e-01 | 91.5% | 88.7% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.60e-01 | 80.2% | 85.9% |
| 2y6uA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 2.96e-01 | 88.7% | 68.6% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 44.0 | 3.29e-01 | 100.0% | 83.4% |
| 4owwB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 36.0 | 3.66e-01 | 89.6% | 73.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969727 | 897.2.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E | 0.83 | 76.0 | 6.66e-01 | 100.0% | 68.7% |
| 3974774 | 897.2.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E | 0.82 | 73.0 | 6.75e-01 | 100.0% | 76.9% |
| 3964215 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.81 | 77.0 | 7.47e-01 | 100.0% | 94.8% |
| 2492102 | 897.2.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E | 0.71 | 64.0 | 5.76e-01 | 100.0% | 74.8% |
| 3613735 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.66 | 54.0 | 4.43e-01 | 88.7% | 99.5% |
| 3718317 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.66 | 54.0 | 4.27e-01 | 88.7% | 90.2% |
| 4020386 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.65 | 50.0 | 4.12e-01 | 81.1% | 58.4% |
| 4974050 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.65 | 45.0 | 4.16e-01 | 71.7% | 98.5% |
| 3271847 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 46.0 | 4.50e-01 | 74.5% | 98.3% |
| 3273410 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.63 | 56.0 | 4.66e-01 | 97.2% | 74.1% |
| 3738407 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.63 | 52.0 | 4.33e-01 | 88.7% | 90.3% |
| 3789105 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.63 | 49.0 | 3.96e-01 | 82.1% | 59.8% |
| 3235681 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.61 | 44.0 | 2.92e-01 | 75.5% | 49.2% |
| 3743230 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.61 | 44.0 | 2.90e-01 | 75.5% | 39.1% |
| 3252796 | 883.1.1.22 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF26547 | 0.61 | 49.0 | 4.01e-01 | 87.7% | 94.6% |
| 3784499 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.61 | 50.0 | 4.19e-01 | 89.6% | 79.5% |
| 3534401 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 43.0 | 3.69e-01 | 73.6% | 83.6% |
| 3924721 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.60 | 55.0 | 4.54e-01 | 100.0% | 77.3% |
| 3213930 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.60 | 55.0 | 4.52e-01 | 100.0% | 75.7% |
| 4012027 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.60 | 52.0 | 4.44e-01 | 93.4% | 75.2% |
| 3782298 | 243.1.1.14 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Mtr2 | 0.60 | 44.0 | 3.72e-01 | 77.4% | 95.4% |
| 3226402 | 243.1.1.82 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 | 0.59 | 42.0 | 3.70e-01 | 73.6% | 86.9% |
| 3239126 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.59 | 43.0 | 3.92e-01 | 75.5% | 87.1% |
| 3605052 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.58 | 52.0 | 4.17e-01 | 100.0% | 69.3% |
| 3392707 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.58 | 48.0 | 4.29e-01 | 92.5% | 76.8% |
| 4062551 | 216.1.1.24 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med14_C | 0.57 | 50.0 | 4.11e-01 | 95.3% | 80.0% |
| 3653384 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.57 | 40.0 | 3.54e-01 | 74.5% | 49.7% |
| 3817253 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.57 | 41.0 | 3.53e-01 | 75.5% | 47.6% |
| 3447523 | 5.1.4.323 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st | 0.57 | 43.0 | 3.11e-01 | 82.1% | 55.8% |
| 3417505 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.56 | 40.0 | 3.49e-01 | 73.6% | 56.2% |
| 4398275 | 2007.1.19.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like | 0.55 | 45.0 | 2.71e-01 | 87.7% | 19.6% |
| 3749122 | 5.1.3.176 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N | 0.54 | 46.0 | 3.12e-01 | 94.3% | 97.5% |
| 4173308 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.53 | 40.0 | 3.39e-01 | 80.2% | 71.1% |
| 3295485 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 42.0 | 3.03e-01 | 86.8% | 84.9% |
| 3332187 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.53 | 42.0 | 3.12e-01 | 88.7% | 82.9% |
| 4013926 | 9.4.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 | 0.52 | 42.0 | 3.82e-01 | 85.8% | 77.9% |
| 4519113 | 230.1.1.2 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GTP_cyclohydroI | 0.52 | 40.0 | 3.35e-01 | 81.1% | 71.1% |
| 5047608 | 4200.1.1.2 ↗ | beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like | 0.52 | 46.0 | 3.80e-01 | 98.1% | 95.9% |
| 3395855 | 243.5.1.7 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 | 0.51 | 42.0 | 3.99e-01 | 90.6% | 75.4% |
| 3749143 | 243.3.1.20 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 | 0.51 | 40.0 | 3.85e-01 | 90.6% | 72.0% |
| 3734097 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 42.0 | 2.96e-01 | 94.3% | 72.4% |
| 3550168 | 4.8.1.27 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N | 0.51 | 37.0 | 4.01e-01 | 100.0% | 91.1% |