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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00487
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00487
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-135
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00095__D19-115
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 3.90e-01 | 71.3% | 93.1% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.64 | 41.0 | 3.93e-01 | 74.1% | 56.0% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 4.07e-01 | 70.4% | 87.2% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 44.0 | 4.15e-01 | 73.1% | 91.7% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 43.0 | 3.89e-01 | 70.4% | 87.2% |
| 3gzrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 46.0 | 4.19e-01 | 76.9% | 87.2% |
| 3f9sB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 3.99e-01 | 72.2% | 89.4% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 43.0 | 3.94e-01 | 71.3% | 84.4% |
| 3ehcB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 4.11e-01 | 73.1% | 91.4% |
| 3nv0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 44.0 | 3.66e-01 | 75.9% | 96.9% |
| 2r4iA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 4.15e-01 | 73.1% | 93.5% |
| 1sjwA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 42.0 | 3.90e-01 | 72.2% | 83.8% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 42.0 | 4.00e-01 | 72.2% | 95.3% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 44.0 | 3.98e-01 | 75.9% | 90.1% |
| 3f7xA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 42.0 | 3.92e-01 | 72.2% | 89.5% |
| 3kkgA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 3.73e-01 | 70.4% | 84.0% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 46.0 | 4.08e-01 | 82.4% | 81.8% |
| 3grdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 41.0 | 3.87e-01 | 72.2% | 88.6% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 44.0 | 4.06e-01 | 79.6% | 90.8% |
| 3rgaA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 43.0 | 4.07e-01 | 77.8% | 88.7% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.59 | 53.0 | 4.39e-01 | 100.0% | 81.7% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.58 | 44.0 | 3.83e-01 | 84.3% | 51.2% |
| 4j8tA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 41.0 | 3.92e-01 | 73.1% | 92.2% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 3.92e-01 | 76.9% | 90.6% |
| 3kspA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 41.0 | 3.88e-01 | 74.1% | 86.0% |
| 3pgbA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 43.0 | 4.25e-01 | 78.7% | 87.1% |
| 3er7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 42.0 | 4.07e-01 | 77.8% | 92.7% |
| 3ebtA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 39.0 | 3.71e-01 | 71.3% | 89.3% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 3.93e-01 | 91.7% | 88.7% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.54 | 49.0 | 4.06e-01 | 100.0% | 81.3% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.76e-01 | 77.8% | 82.7% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.54 | 48.0 | 3.87e-01 | 100.0% | 66.8% |
| 2gexA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 4.06e-01 | 91.7% | 90.4% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.53 | 40.0 | 3.78e-01 | 81.5% | 91.2% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.24e-01 | 72.2% | 94.3% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 46.0 | 4.10e-01 | 94.4% | 91.9% |
| 2chcC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.70e-01 | 87.0% | 89.9% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.52 | 47.0 | 4.42e-01 | 100.0% | 97.7% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 3.43e-01 | 71.3% | 93.7% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 3.94e-01 | 88.9% | 91.9% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.51 | 43.0 | 3.76e-01 | 94.4% | 81.8% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2980101 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.69 | 54.0 | 4.17e-01 | 83.3% | 75.4% |
| 3021721 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.69 | 54.0 | 4.11e-01 | 83.3% | 74.2% |
| 3281242 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.66 | 45.0 | 4.24e-01 | 70.4% | 90.8% |
| 3242736 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 46.0 | 4.26e-01 | 74.1% | 88.6% |
| 3181202 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.65 | 45.0 | 4.02e-01 | 71.3% | 88.0% |
| 3278632 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.65 | 44.0 | 4.12e-01 | 70.4% | 88.1% |
| 3290450 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.64 | 44.0 | 3.99e-01 | 70.4% | 85.3% |
| 4962810 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.63 | 44.0 | 4.06e-01 | 71.3% | 88.1% |
| 4959875 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.63 | 43.0 | 3.99e-01 | 71.3% | 87.9% |
| 4020386 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 49.0 | 4.07e-01 | 83.3% | 62.1% |
| 3539661 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.63 | 57.0 | 4.54e-01 | 99.1% | 71.4% |
| 169590 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.62 | 44.0 | 3.99e-01 | 72.2% | 88.1% |
| 3281901 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.62 | 43.0 | 3.91e-01 | 71.3% | 86.9% |
| 2549486 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.62 | 44.0 | 4.02e-01 | 73.1% | 92.2% |
| 3870002 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.61 | 56.0 | 3.72e-01 | 100.0% | 34.9% |
| 4022303 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 44.0 | 3.94e-01 | 75.0% | 79.3% |
| 4927499 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.60 | 44.0 | 3.86e-01 | 76.9% | 85.5% |
| 2163935 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.60 | 43.0 | 4.00e-01 | 75.0% | 88.9% |
| 3690324 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 44.0 | 4.01e-01 | 76.9% | 88.6% |
| 5071439 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.59 | 43.0 | 4.00e-01 | 76.9% | 89.9% |
| 3789105 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.59 | 45.0 | 3.73e-01 | 83.3% | 61.8% |
| 3598427 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 44.0 | 4.04e-01 | 78.7% | 87.9% |
| 5039587 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.58 | 42.0 | 3.94e-01 | 75.0% | 92.3% |
| 4878195 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.58 | 41.0 | 4.15e-01 | 74.1% | 90.0% |
| 6392 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.58 | 42.0 | 3.92e-01 | 76.9% | 90.6% |
| 3970325 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.58 | 44.0 | 4.02e-01 | 79.6% | 90.7% |
| 3633291 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.57 | 40.0 | 2.72e-01 | 73.1% | 93.6% |
| 4950139 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.57 | 41.0 | 3.98e-01 | 76.9% | 92.0% |
| 3712703 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.56 | 49.0 | 3.59e-01 | 98.1% | 61.6% |
| 5076453 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.56 | 40.0 | 3.95e-01 | 74.1% | 72.2% |
| 3428134 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.56 | 41.0 | 4.24e-01 | 75.9% | 95.0% |
| 2858695 | 331.3.1.19 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C | 0.56 | 49.0 | 3.81e-01 | 99.1% | 68.2% |
| 3229636 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.55 | 48.0 | 4.01e-01 | 95.4% | 74.1% |
| 3798295 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.55 | 40.0 | 3.39e-01 | 76.9% | 73.5% |
| 3592097 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 49.0 | 4.52e-01 | 100.0% | 97.1% |
| 4947601 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.53 | 42.0 | 3.03e-01 | 84.3% | 39.7% |
| 4062859 | 331.3.1.45 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28462 | 0.53 | 43.0 | 3.60e-01 | 88.0% | 60.5% |
| 6406 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.53 | 37.0 | 3.24e-01 | 72.2% | 94.3% |
| 5048348 | 3080.1.1.0 ↗ | a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins | 0.52 | 41.0 | 3.39e-01 | 84.3% | 95.0% |
| 4126991 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 36.0 | 3.91e-01 | 72.2% | 86.7% |
| 3715576 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 48.0 | 4.39e-01 | 100.0% | 100.0% |
| 4386614 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.52 | 43.0 | 3.83e-01 | 88.0% | 68.0% |
| 5069722 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 43.0 | 3.07e-01 | 90.7% | 42.1% |
| 3390360 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 4.08e-01 | 87.0% | 90.3% |
| 5054725 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.51 | 34.0 | 3.28e-01 | 88.0% | 60.8% |
| 3589894 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 42.0 | 3.69e-01 | 91.7% | 92.7% |
| 4403462 | 331.3.1.45 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28462 | 0.50 | 43.0 | 3.43e-01 | 92.6% | 79.1% |