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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00519
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00519
Identity
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-98
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a57A00 | 2.60.270.30 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin | 0.66 | 48.0 | 4.09e-01 | 76.0% | 98.1% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 33.0 | 4.11e-01 | 85.4% | 87.5% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.58 | 36.0 | 4.22e-01 | 85.4% | 93.8% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 34.0 | 4.00e-01 | 78.1% | 92.4% |
| 4i2yA01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.53 | 42.0 | 3.20e-01 | 85.4% | 68.2% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.51 | 36.0 | 4.02e-01 | 78.1% | 93.4% |
| 1sqiA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 37.0 | 3.12e-01 | 78.1% | 65.9% |
| 1914A00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.50 | 37.0 | 3.10e-01 | 78.1% | 45.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978284 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 47.0 | 4.39e-01 | 79.2% | 66.7% |
| 4399447 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.58 | 38.0 | 4.40e-01 | 85.4% | 98.5% |
| 4178357 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 37.0 | 4.23e-01 | 86.5% | 93.8% |
| 4051888 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 39.0 | 4.32e-01 | 86.5% | 94.6% |
| 3797447 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.54 | 40.0 | 4.05e-01 | 78.1% | 95.8% |
| 3914004 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.53 | 42.0 | 3.16e-01 | 90.6% | 82.1% |
| 3650144 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 39.0 | 2.57e-01 | 79.2% | 87.8% |
| 4990229 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.52 | 34.0 | 4.02e-01 | 80.2% | 100.0% |
| 3399393 | 7524.1.1.4 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › DUF1487 | 0.51 | 40.0 | 3.01e-01 | 83.3% | 85.1% |
| 5017962 | 220.1.1.322 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 | 0.51 | 35.0 | 3.28e-01 | 72.9% | 96.0% |
| 3792405 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 42.0 | 2.72e-01 | 94.8% | 47.3% |