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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00582

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00582

Identity

Kingdom:
phage

Quality

84.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-105
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 36.0 4.57e-01 94.9% 74.5%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.76 44.0 3.74e-01 100.0% 37.5%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 57.0 5.29e-01 87.3% 100.0%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 36.0 3.70e-01 100.0% 53.3%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.66 48.0 4.24e-01 94.9% 53.1%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.35e-01 92.4% 78.5%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 4.93e-01 97.5% 89.0%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.60 50.0 5.01e-01 98.7% 89.0%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 4.72e-01 94.9% 100.0%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 52.0 4.75e-01 94.9% 88.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.60 35.0 3.33e-01 97.5% 47.3%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 51.0 4.62e-01 94.9% 89.6%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 36.0 3.22e-01 100.0% 41.5%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.58 49.0 4.85e-01 98.7% 87.2%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 51.0 4.79e-01 100.0% 81.2%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 4.36e-01 100.0% 82.7%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 52.0 4.85e-01 100.0% 87.6%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 4.22e-01 100.0% 63.0%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 4.22e-01 100.0% 71.0%
4u0wA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.56 47.0 3.82e-01 97.5% 84.9%
2ooiA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.56 46.0 3.81e-01 94.9% 89.6%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.56 31.0 3.56e-01 100.0% 75.0%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 45.0 4.58e-01 98.7% 97.4%
3bwgA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.55 45.0 3.73e-01 94.9% 86.0%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 41.0 3.57e-01 82.3% 91.5%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.55 47.0 4.57e-01 92.4% 87.2%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 42.0 3.58e-01 86.1% 84.8%
2nqlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.33e-01 84.8% 90.5%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 40.0 3.38e-01 98.7% 46.0%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 28.0 3.28e-01 97.5% 79.5%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.46e-01 82.3% 89.8%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.89e-01 91.1% 86.9%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 33.0 3.03e-01 96.2% 46.8%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.51 40.0 3.29e-01 98.7% 46.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211784 2.1.1.249 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_2nd 0.73 56.0 5.80e-01 97.5% 86.7%
3932882 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.73 65.0 6.51e-01 97.5% 100.0%
3163776 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 59.0 4.94e-01 87.3% 85.4%
4946434 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.71 57.0 4.80e-01 86.1% 86.9%
3704389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 64.0 6.27e-01 100.0% 94.1%
3967545 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 61.0 4.81e-01 94.9% 83.1%
4960285 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.67 50.0 4.35e-01 77.2% 91.3%
4067858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 53.0 5.60e-01 94.9% 95.7%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.66 50.0 5.47e-01 98.7% 98.5%
4221404 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.66 55.0 5.54e-01 98.7% 90.0%
3839111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 5.51e-01 98.7% 85.6%
3387523 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 5.38e-01 98.7% 84.4%
3883964 2.3.1.2 beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.64 56.0 4.53e-01 96.2% 61.3%
5048435 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 4.81e-01 94.9% 100.0%
4966111 2.1.1.378 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26006 0.64 53.0 5.50e-01 93.7% 94.7%
5059843 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 57.0 5.12e-01 96.2% 93.3%
4404198 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.64 53.0 5.42e-01 94.9% 94.7%
4683474 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.64 53.0 5.35e-01 98.7% 90.0%
3990098 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 56.0 5.05e-01 98.7% 71.8%
3987614 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.63 53.0 5.30e-01 100.0% 91.3%
4956522 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 4.72e-01 100.0% 64.3%
4970675 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.62 54.0 4.64e-01 93.7% 70.8%
3284336 3816.1.1.0 beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein 0.62 47.0 4.75e-01 97.5% 80.0%
5052424 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 54.0 4.54e-01 100.0% 69.3%
4288723 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.62 49.0 5.06e-01 98.7% 94.7%
5058096 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 54.0 5.30e-01 94.9% 98.8%
4141240 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.62 51.0 5.15e-01 98.7% 92.5%
3970058 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 54.0 4.92e-01 98.7% 73.3%
3586876 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 51.0 4.99e-01 94.9% 84.7%
5026160 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 4.74e-01 94.9% 77.3%
4019088 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 3.90e-01 100.0% 53.3%
5053650 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 53.0 4.52e-01 94.9% 75.2%
4886624 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.61 52.0 5.22e-01 98.7% 92.5%
4222631 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 52.0 4.86e-01 98.7% 77.0%
3319527 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.61 52.0 4.05e-01 96.2% 84.6%
4965400 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.54e-01 94.9% 72.5%
4082776 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.60 50.0 5.00e-01 98.7% 92.5%
4038686 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.60 52.0 5.12e-01 96.2% 91.8%
3520442 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 51.0 4.72e-01 98.7% 73.3%
4449302 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 54.0 4.90e-01 100.0% 77.1%
4975146 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 53.0 4.45e-01 100.0% 69.6%
4245059 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.59 49.0 4.85e-01 98.7% 88.2%
5068438 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 51.0 4.33e-01 94.9% 65.4%
5046650 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 53.0 4.45e-01 100.0% 60.7%
4943785 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 4.32e-01 100.0% 69.3%
4584501 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.59 48.0 4.87e-01 98.7% 92.5%
4208913 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.88e-01 98.7% 92.5%
4974931 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 51.0 4.48e-01 100.0% 64.2%
4183023 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.59 48.0 4.82e-01 98.7% 92.5%
4072975 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.59 48.0 4.83e-01 98.7% 92.5%
4396747 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 48.0 4.78e-01 98.7% 91.3%
3953289 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 48.0 4.72e-01 98.7% 87.1%
4070256 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 48.0 4.86e-01 98.7% 93.8%
5023276 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.91e-01 100.0% 88.2%
5042273 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.49e-01 94.9% 76.4%
4085660 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 48.0 4.80e-01 98.7% 92.5%
4240811 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 49.0 4.85e-01 100.0% 90.6%
5008548 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.85e-01 100.0% 93.7%
4987494 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 49.0 4.79e-01 100.0% 87.8%
2519670 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 50.0 4.52e-01 98.7% 73.4%
4272096 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.57 49.0 4.74e-01 98.7% 93.3%
3227986 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 4.80e-01 94.9% 92.5%
4204456 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.57 48.0 4.84e-01 98.7% 96.2%
3919562 5.1.3.117 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.56 40.0 2.78e-01 75.9% 100.0%
4952930 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.56 43.0 4.30e-01 94.9% 81.2%
5065884 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 48.0 4.18e-01 100.0% 64.0%
4041632 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 47.0 3.98e-01 100.0% 62.1%
4317833 2.1.1.264 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BrxL_N 0.54 45.0 3.95e-01 98.7% 60.8%
4420993 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 46.0 4.11e-01 100.0% 78.3%
4886563 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.50 42.0 3.74e-01 100.0% 63.3%