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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00617
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00617
Identity
- Kingdom:
- phage
Quality
72.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1520-1600
Domain cluster:
rep: NC_048751.1__YP_009843808.1__HWC07_gp127__00127__D354-425
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03895.22 best | YadA_anchor | 54.6 | 1.30e-14 | 72.8% | 96.7% |
D2
medium
residues 56-176
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 28.3 | 2.60e-06 | 22.3% | 100.0% |
| PF05658.20 | YadA_head | 10.3 | 1.10e+00 | 19.8% | 70.4% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wp8A02 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.80 | 69.0 | 6.30e-01 | 97.5% | 71.7% |
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.77 | 72.0 | 6.17e-01 | 97.5% | 65.4% |
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.77 | 70.0 | 6.73e-01 | 98.3% | 84.4% |
| 3s6lD00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.75 | 71.0 | 6.31e-01 | 96.7% | 77.2% |
| 3ultA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.75 | 64.0 | 6.64e-01 | 96.7% | 95.6% |
| 3ntnB01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.73 | 68.0 | 6.01e-01 | 97.5% | 89.7% |
| 3sucA02 | 2.160.10.20 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Insect antifreeze protein | 0.71 | 65.0 | 6.31e-01 | 97.5% | 87.3% |
| 2yo0A01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.67 | 53.0 | 4.78e-01 | 92.6% | 62.9% |
| 3vbiA01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.65 | 59.0 | 5.17e-01 | 95.9% | 86.0% |
| 4r36A01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.65 | 59.0 | 5.02e-01 | 97.5% | 79.9% |
| 6sc4A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.65 | 58.0 | 5.07e-01 | 96.7% | 74.0% |
| 4m9cA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.63 | 55.0 | 5.68e-01 | 92.6% | 100.0% |
| 7d73E02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.63 | 53.0 | 5.13e-01 | 93.4% | 79.6% |
| 7d73C02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.62 | 56.0 | 4.94e-01 | 95.9% | 83.9% |
| 3c8vA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.62 | 57.0 | 4.56e-01 | 100.0% | 67.9% |
| 7whsA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.62 | 55.0 | 5.24e-01 | 96.7% | 85.2% |
| 8gppA01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.61 | 55.0 | 4.81e-01 | 100.0% | 76.3% |
| 2rijA03 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.61 | 55.0 | 4.85e-01 | 99.2% | 100.0% |
| 1fxjA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.59 | 44.0 | 4.95e-01 | 86.0% | 100.0% |
| 5l6vE02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.56 | 49.0 | 4.80e-01 | 94.2% | 87.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984088 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.95 | 71.0 | 5.70e-01 | 96.7% | 44.3% |
| 4572690 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.93 | 70.0 | 7.42e-01 | 96.7% | 85.5% |
| 4593120 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.82 | 71.0 | 6.08e-01 | 97.5% | 61.1% |
| 4225149 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.82 | 70.0 | 5.65e-01 | 97.5% | 51.0% |
| 1503827 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.80 | 69.0 | 5.34e-01 | 97.5% | 46.0% |
| 4597136 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.78 | 73.0 | 4.82e-01 | 96.7% | 34.2% |
| 4101253 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.78 | 69.0 | 5.95e-01 | 97.5% | 63.4% |
| 4394203 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.78 | 73.0 | 5.06e-01 | 96.7% | 37.6% |
| 185868 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.77 | 72.0 | 6.62e-01 | 97.5% | 78.0% |
| 3982518 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.75 | 71.0 | 6.34e-01 | 97.5% | 75.0% |
| 1834008 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.75 | 71.0 | 6.31e-01 | 96.7% | 77.2% |
| 2880595 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.75 | 71.0 | 4.94e-01 | 97.5% | 36.5% |
| 3984087 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.75 | 71.0 | 6.38e-01 | 97.5% | 78.7% |
| 1146565 | 208.7.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › LbR_Ice_bind | 0.75 | 64.0 | 6.64e-01 | 96.7% | 95.6% |
| 5033305 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.75 | 70.0 | 6.26e-01 | 97.5% | 80.0% |
| 5055775 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.74 | 69.0 | 5.42e-01 | 97.5% | 55.2% |
| 1842566 | 208.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.73 | 68.0 | 5.17e-01 | 97.5% | 49.8% |
| 428539 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.73 | 68.0 | 4.97e-01 | 97.5% | 43.8% |
| 3952747 | 208.2.1.9 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Pentapeptide_2 | 0.72 | 51.0 | 3.44e-01 | 96.7% | 21.7% |
| 364253 | 208.2.1.5 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Peptidase_G2 | 0.72 | 66.0 | 6.23e-01 | 97.5% | 83.6% |
| 4883110 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.70 | 64.0 | 5.23e-01 | 96.7% | 57.3% |
| 5052772 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.68 | 53.0 | 5.00e-01 | 82.6% | 85.4% |
| 5049160 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.67 | 59.0 | 6.04e-01 | 95.9% | 98.3% |
| 4397629 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.67 | 59.0 | 4.65e-01 | 96.7% | 62.0% |
| 4562243 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.66 | 60.0 | 4.59e-01 | 96.7% | 63.1% |
| 4081701 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.66 | 57.0 | 4.54e-01 | 95.9% | 61.6% |
| 4570556 | 208.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C | 0.66 | 59.0 | 4.61e-01 | 96.7% | 63.2% |
| 5056028 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.66 | 61.0 | 5.45e-01 | 100.0% | 82.4% |
| 5010769 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.66 | 59.0 | 5.46e-01 | 95.9% | 77.3% |
| 4617419 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.65 | 59.0 | 4.60e-01 | 97.5% | 67.1% |
| 3511243 | 208.1.1.9 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DCTN5 | 0.65 | 57.0 | 5.33e-01 | 93.4% | 90.3% |
| 4526775 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.64 | 59.0 | 5.38e-01 | 98.3% | 86.5% |
| 4142167 | 208.1.1.21 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, Hexapep_2, GMPPB_C | 0.64 | 58.0 | 4.88e-01 | 97.5% | 78.0% |
| 4041616 | 208.1.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU | 0.64 | 51.0 | 5.47e-01 | 82.6% | 98.1% |
| 4981883 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.64 | 51.0 | 5.37e-01 | 87.6% | 92.7% |
| 5069914 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.63 | 55.0 | 5.67e-01 | 95.0% | 100.0% |
| 3716111 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.63 | 55.0 | 4.99e-01 | 94.2% | 81.9% |
| 4998131 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.62 | 53.0 | 5.19e-01 | 90.1% | 100.0% |
| 4978052 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.62 | 56.0 | 5.00e-01 | 100.0% | 83.5% |
| 5069167 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.60 | 54.0 | 4.79e-01 | 99.2% | 88.6% |
| 3693046 | 208.1.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac | 0.60 | 53.0 | 4.40e-01 | 96.7% | 84.3% |
| 3985064 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.58 | 39.0 | 3.85e-01 | 89.3% | 64.8% |
| 4965865 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.58 | 51.0 | 4.62e-01 | 93.4% | 78.8% |
| 3314199 | 208.1.1.30 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › PF28366 | 0.58 | 51.0 | 4.63e-01 | 100.0% | 83.5% |
| 4673671 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.54 | 48.0 | 4.70e-01 | 93.4% | 89.2% |
D3
medium
residues 607-678
D4
medium
residues 857-927
D5
medium
residues 1143-1213
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 29.8 | 8.40e-07 | 38.0% | 92.6% |
| PF05658.20 | YadA_head | 21.0 | 5.00e-04 | 36.6% | 96.3% |
| PF05658.20 | YadA_head | 21.4 | 3.60e-04 | 33.8% | 88.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6lD00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.99 | 96.0 | 7.05e-01 | 100.0% | 44.9% |
| 3wp8A02 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.97 | 93.0 | 6.95e-01 | 100.0% | 56.6% |
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.97 | 93.0 | 6.61e-01 | 100.0% | 46.4% |
| 3ntnB01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.94 | 89.0 | 6.54e-01 | 100.0% | 53.3% |
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.93 | 88.0 | 6.86e-01 | 100.0% | 55.6% |
| 2yo0A01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.91 | 85.0 | 6.28e-01 | 98.6% | 54.1% |
| 4ea9A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.79 | 72.0 | 6.20e-01 | 100.0% | 80.9% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.68 | 57.0 | 4.15e-01 | 87.3% | 42.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984088 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 1.00 | 97.0 | 6.57e-01 | 100.0% | 40.5% |
| 4593120 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 1.00 | 97.0 | 6.88e-01 | 100.0% | 48.6% |
| 3982518 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 1.00 | 97.0 | 7.06e-01 | 100.0% | 53.1% |
| 4394203 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 1.00 | 97.0 | 5.91e-01 | 100.0% | 27.2% |
| 4597136 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 1.00 | 97.0 | 5.70e-01 | 100.0% | 25.4% |
| 4572690 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.99 | 97.0 | 8.02e-01 | 100.0% | 77.3% |
| 3965736 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.99 | 96.0 | 6.56e-01 | 100.0% | 34.6% |
| 1834008 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.99 | 96.0 | 7.05e-01 | 100.0% | 44.9% |
| 2880595 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.99 | 96.0 | 5.89e-01 | 100.0% | 25.8% |
| 3984087 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.99 | 96.0 | 7.07e-01 | 100.0% | 45.8% |
| 4101253 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.99 | 95.0 | 6.79e-01 | 100.0% | 41.7% |
| 3965888 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.99 | 95.0 | 6.54e-01 | 100.0% | 35.5% |
| 5033305 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.98 | 94.0 | 6.90e-01 | 100.0% | 53.1% |
| 4225149 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.97 | 94.0 | 6.37e-01 | 100.0% | 39.5% |
| 5055775 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.97 | 93.0 | 6.21e-01 | 100.0% | 38.3% |
| 1503827 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.97 | 93.0 | 6.15e-01 | 100.0% | 36.3% |
| 185868 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.97 | 93.0 | 6.97e-01 | 100.0% | 55.3% |
| 3189969 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.96 | 91.0 | 6.90e-01 | 100.0% | 48.3% |
| 3965420 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.95 | 92.0 | 7.30e-01 | 100.0% | 59.2% |
| 3164356 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.95 | 90.0 | 6.05e-01 | 100.0% | 40.4% |
| 4775891 | 208.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.94 | 89.0 | 6.59e-01 | 100.0% | 54.7% |
| 4673672 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.92 | 88.0 | 5.99e-01 | 98.6% | 42.9% |
| 3978492 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.92 | 87.0 | 5.68e-01 | 98.6% | 34.4% |
| 1036377 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.89 | 83.0 | 6.82e-01 | 98.6% | 73.5% |
| 4673671 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.89 | 80.0 | 6.30e-01 | 94.4% | 70.8% |
| 3472481 | 208.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C | 0.77 | 70.0 | 5.25e-01 | 100.0% | 68.8% |
| 3985064 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.73 | 58.0 | 4.68e-01 | 87.3% | 47.2% |
D6
medium
residues 1360-1474
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05658.20 best | YadA_head | 35.5 | 1.30e-08 | 23.5% | 100.0% |
| PF05658.20 | YadA_head | 24.1 | 5.00e-05 | 23.5% | 100.0% |
| PF05658.20 | YadA_head | 31.0 | 3.40e-07 | 23.5% | 100.0% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6lD00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.95 | 83.0 | 7.25e-01 | 100.0% | 65.2% |
| 2yo0A01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.88 | 72.0 | 6.31e-01 | 88.7% | 61.0% |
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.85 | 80.0 | 6.68e-01 | 100.0% | 62.6% |
| 3ntnB01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.85 | 81.0 | 7.00e-01 | 100.0% | 84.8% |
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.85 | 83.0 | 7.72e-01 | 100.0% | 86.7% |
| 3wp8A02 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.82 | 79.0 | 7.03e-01 | 100.0% | 90.8% |
| 4e79A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.76 | 65.0 | 5.22e-01 | 89.6% | 92.9% |
| 2iu8C02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.70 | 66.0 | 5.28e-01 | 100.0% | 86.7% |
| 3tv0A00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.69 | 65.0 | 5.98e-01 | 100.0% | 92.3% |
| 5afuV00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.66 | 59.0 | 5.15e-01 | 95.7% | 82.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4572690 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.96 | 82.0 | 8.47e-01 | 100.0% | 91.8% |
| 1834008 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.95 | 83.0 | 7.25e-01 | 100.0% | 65.2% |
| 3984087 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.95 | 83.0 | 7.29e-01 | 100.0% | 66.5% |
| 3965888 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.94 | 78.0 | 6.21e-01 | 95.7% | 49.0% |
| 4597136 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.93 | 90.0 | 5.85e-01 | 100.0% | 32.5% |
| 4394203 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.93 | 90.0 | 6.15e-01 | 100.0% | 35.2% |
| 1503827 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.90 | 86.0 | 6.51e-01 | 99.1% | 52.3% |
| 3982518 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.87 | 83.0 | 7.19e-01 | 100.0% | 70.0% |
| 1036377 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.86 | 71.0 | 7.06e-01 | 88.7% | 82.9% |
| 3978492 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.86 | 72.0 | 5.34e-01 | 88.7% | 39.6% |
| 3984088 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.86 | 83.0 | 6.49e-01 | 100.0% | 54.3% |
| 4593120 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.86 | 83.0 | 6.94e-01 | 100.0% | 65.1% |
| 2880595 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.85 | 83.0 | 5.64e-01 | 100.0% | 34.7% |
| 3189969 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.85 | 74.0 | 6.75e-01 | 90.4% | 95.2% |
| 3965736 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.85 | 83.0 | 6.57e-01 | 100.0% | 56.1% |
| 4775891 | 208.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.85 | 81.0 | 7.08e-01 | 100.0% | 87.0% |
| 4101253 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.84 | 82.0 | 6.88e-01 | 100.0% | 65.7% |
| 1842566 | 208.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.84 | 80.0 | 5.94e-01 | 100.0% | 61.5% |
| 428539 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.84 | 80.0 | 5.73e-01 | 100.0% | 54.1% |
| 4225149 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.84 | 81.0 | 6.33e-01 | 100.0% | 54.3% |
| 185868 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.83 | 80.0 | 7.18e-01 | 100.0% | 76.0% |
| 5055775 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.83 | 80.0 | 6.14e-01 | 100.0% | 52.6% |
| 3965420 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.83 | 75.0 | 7.31e-01 | 94.8% | 87.2% |
| 5033305 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.83 | 81.0 | 7.02e-01 | 100.0% | 83.7% |
| 4673672 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.77 | 67.0 | 5.33e-01 | 89.6% | 54.1% |
| 3841938 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.72 | 65.0 | 5.28e-01 | 100.0% | 53.8% |
| 4635247 | 208.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C | 0.70 | 66.0 | 4.98e-01 | 100.0% | 67.2% |
| 4309106 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.70 | 59.0 | 5.09e-01 | 89.6% | 59.4% |
| None | — | 0.68 | 62.0 | 5.47e-01 | 96.5% | 72.5% | |
| 3985064 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.64 | 38.0 | 3.75e-01 | 87.8% | 56.0% |
| 1568674 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.61 | 44.0 | 3.49e-01 | 77.4% | 40.2% |