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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00624
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00624
Identity
- Kingdom:
- phage
Quality
89.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 37.0 | 4.27e-01 | 72.5% | 69.4% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 37.0 | 4.04e-01 | 72.5% | 62.5% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.68 | 39.0 | 3.45e-01 | 89.9% | 39.2% |
| 5cbeE00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 37.0 | 3.89e-01 | 79.7% | 59.4% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.63 | 41.0 | 3.72e-01 | 91.3% | 48.9% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 41.0 | 4.33e-01 | 85.5% | 75.8% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 42.0 | 3.62e-01 | 98.6% | 46.2% |
| 2kcdA00 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.60 | 45.0 | 3.80e-01 | 81.2% | 63.3% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 35.0 | 3.55e-01 | 75.4% | 58.2% |
| 3w6sC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 46.0 | 3.30e-01 | 89.9% | 50.2% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 4.53e-01 | 95.7% | 88.7% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 32.0 | 2.90e-01 | 92.8% | 39.2% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 36.0 | 3.66e-01 | 79.7% | 63.4% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 3.91e-01 | 85.5% | 69.0% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 43.0 | 3.57e-01 | 84.1% | 60.2% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 39.0 | 3.85e-01 | 85.5% | 68.1% |
| 2eigA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.23e-01 | 94.2% | 80.0% |
| 1z4vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 43.0 | 2.79e-01 | 100.0% | 40.3% |
| 5hftD00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.54 | 44.0 | 3.46e-01 | 92.8% | 90.3% |
| 2hczX02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.52 | 40.0 | 3.56e-01 | 84.1% | 76.0% |
| 1uurA02 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.52 | 39.0 | 3.21e-01 | 81.2% | 63.3% |
| 5ucdA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 36.0 | 2.60e-01 | 75.4% | 66.8% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 46.0 | 2.92e-01 | 100.0% | 97.1% |
| 3qeeB00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 44.0 | 2.96e-01 | 100.0% | 26.8% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 39.0 | 2.64e-01 | 87.0% | 88.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4400697 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.66 | 45.0 | 4.46e-01 | 72.5% | 100.0% |
| 3945545 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.65 | 36.0 | 3.73e-01 | 81.2% | 56.9% |
| 3790217 | 213.1.1.34 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 | 0.63 | 54.0 | 4.04e-01 | 100.0% | 63.7% |
| 2727964 | 4.1.1.105 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5604 | 0.61 | 41.0 | 4.38e-01 | 85.5% | 79.7% |
| 4241924 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.60 | 40.0 | 3.65e-01 | 84.1% | 52.2% |
| 3546306 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.60 | 42.0 | 3.80e-01 | 94.2% | 52.6% |
| 3897847 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.59 | 53.0 | 3.98e-01 | 100.0% | 41.4% |
| 4826815 | 10.1.1.14 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 | 0.59 | 48.0 | 3.63e-01 | 91.3% | 55.7% |
| 4516768 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.59 | 44.0 | 3.84e-01 | 82.6% | 70.9% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 39.0 | 4.30e-01 | 85.5% | 87.3% |
| 3240833 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.58 | 42.0 | 2.83e-01 | 78.3% | 30.5% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 38.0 | 4.12e-01 | 82.6% | 83.6% |
| 3876697 | 5.1.5.110 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_FAM234A_B | 0.56 | 44.0 | 2.69e-01 | 87.0% | 87.5% |
| 3332667 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.56 | 48.0 | 3.11e-01 | 97.1% | 29.8% |
| 3518469 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 47.0 | 3.92e-01 | 100.0% | 63.8% |
| 3684172 | 5.1.5.45 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN | 0.55 | 49.0 | 3.07e-01 | 100.0% | 92.3% |
| 3828657 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 42.0 | 3.79e-01 | 87.0% | 97.0% |
| 4081828 | 3421.1.1.1 ↗ | a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD | 0.54 | 37.0 | 2.92e-01 | 94.2% | 35.6% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 38.0 | 4.04e-01 | 84.1% | 85.0% |
| 5032320 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.53 | 40.0 | 3.84e-01 | 84.1% | 75.3% |
| 4466667 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.53 | 38.0 | 3.31e-01 | 76.8% | 59.1% |
| 3801039 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.53 | 41.0 | 3.22e-01 | 89.9% | 59.4% |
| 4029821 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.53 | 44.0 | 3.10e-01 | 95.7% | 43.5% |
| 5038450 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.52 | 45.0 | 3.08e-01 | 100.0% | 37.8% |
| 4479763 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 41.0 | 3.75e-01 | 87.0% | 67.4% |
| 4937014 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 41.0 | 2.65e-01 | 92.8% | 29.2% |
| 3974914 | 7089.1.1.4 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › FlgI | 0.51 | 37.0 | 3.12e-01 | 85.5% | 46.1% |
| 4466177 | 304.48.1.17 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 | 0.51 | 42.0 | 2.89e-01 | 91.3% | 53.1% |
| 4339016 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.51 | 43.0 | 3.73e-01 | 92.8% | 66.7% |
| 3494556 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.50 | 38.0 | 3.06e-01 | 85.5% | 66.5% |
| 3929482 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.50 | 43.0 | 3.37e-01 | 100.0% | 78.1% |