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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00625
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00625
Identity
- Kingdom:
- phage
Quality
54.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 97-237
D2
high
residues 254-292
Domain cluster:
rep: MN988548.1__QIG75842.1__EVC20_103__00103__D15-52
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wiiA01 | 2.20.25.190 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 57.0 | 5.03e-01 | 100.0% | 67.7% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.38e-01 | 97.4% | 54.2% |
| 2jxwA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.63 | 42.0 | 3.49e-01 | 100.0% | 36.0% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 48.0 | 4.27e-01 | 100.0% | 57.6% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 50.0 | 4.39e-01 | 100.0% | 71.9% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.61 | 43.0 | 2.80e-01 | 79.5% | 42.8% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.61 | 50.0 | 3.65e-01 | 100.0% | 43.2% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 43.0 | 4.15e-01 | 97.4% | 63.8% |
| 2e9hA02 | 2.20.25.350 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 42.0 | 4.17e-01 | 79.5% | 79.5% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 42.0 | 4.05e-01 | 84.6% | 65.2% |
| 4hc5D00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 41.0 | 2.93e-01 | 71.8% | 23.7% |
| 4b9wA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 41.0 | 3.84e-01 | 97.4% | 55.4% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 47.0 | 4.34e-01 | 97.4% | 66.7% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 39.0 | 4.08e-01 | 100.0% | 81.8% |
| 1fx2A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 43.0 | 2.78e-01 | 89.7% | 67.7% |
| 2mdiA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.58 | 46.0 | 4.19e-01 | 100.0% | 64.3% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 47.0 | 3.59e-01 | 100.0% | 70.3% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 45.0 | 4.08e-01 | 100.0% | 71.9% |
| 2pm9A02 | 2.20.25.400 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 38.0 | 4.03e-01 | 76.9% | 93.3% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 45.0 | 3.30e-01 | 100.0% | 64.6% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.55 | 42.0 | 3.54e-01 | 94.9% | 46.8% |
| 1flcB00 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.55 | 39.0 | 2.64e-01 | 76.9% | 92.0% |
| 1uebA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 44.0 | 3.96e-01 | 100.0% | 69.8% |
| 4jp0A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 43.0 | 3.11e-01 | 100.0% | 52.8% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.54 | 39.0 | 3.55e-01 | 100.0% | 53.8% |
| 4redB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 3.38e-01 | 94.9% | 91.7% |
| 1tk7A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.53 | 39.0 | 3.97e-01 | 97.4% | 91.9% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 2.91e-01 | 97.4% | 31.0% |
| 1efzA00 | 3.20.20.105 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like | 0.53 | 37.0 | 2.23e-01 | 79.5% | 12.6% |
| 6lf2B01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 40.0 | 3.02e-01 | 97.4% | 58.9% |
| 1fotA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.05e-01 | 94.9% | 73.8% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 2.55e-01 | 94.9% | 27.3% |
| 3nynB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 2.53e-01 | 100.0% | 43.9% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 36.0 | 2.21e-01 | 79.5% | 36.0% |
| 2acxA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.18e-01 | 94.9% | 86.8% |
| 1st8A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 37.0 | 2.34e-01 | 100.0% | 17.7% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.51 | 44.0 | 3.96e-01 | 100.0% | 78.2% |
| 4ianA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 35.0 | 2.32e-01 | 79.5% | 23.0% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 39.0 | 3.10e-01 | 100.0% | 35.0% |
| 3qr8A02 | 6.20.150.10 | Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › | 0.51 | 35.0 | 3.01e-01 | 71.8% | 39.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 58.0 | 5.51e-01 | 100.0% | 74.0% |
| 5058682 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.72 | 48.0 | 2.95e-01 | 76.9% | 12.3% |
| 5024226 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.71 | 52.0 | 4.99e-01 | 82.1% | 68.9% |
| 3701625 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.71 | 48.0 | 4.63e-01 | 76.9% | 62.2% |
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 60.0 | 5.28e-01 | 100.0% | 68.3% |
| 5032252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 48.0 | 4.48e-01 | 74.4% | 58.0% |
| 4944397 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 55.0 | 5.23e-01 | 100.0% | 90.0% |
| 3584345 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.68 | 47.0 | 3.21e-01 | 76.9% | 20.7% |
| 4929592 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 44.0 | 4.44e-01 | 92.3% | 66.7% |
| 3618504 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.66 | 45.0 | 4.01e-01 | 100.0% | 48.3% |
| 5030311 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 45.0 | 4.03e-01 | 71.8% | 56.4% |
| 4999716 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 41.0 | 4.24e-01 | 71.8% | 74.3% |
| 3986842 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 42.0 | 3.53e-01 | 71.8% | 38.6% |
| 4525369 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.62 | 48.0 | 3.36e-01 | 97.4% | 35.6% |
| 2426538 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.62 | 43.0 | 3.09e-01 | 74.4% | 28.1% |
| 3699899 | 214.1.1.6 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2_2 | 0.61 | 50.0 | 3.70e-01 | 100.0% | 34.2% |
| 4628905 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.61 | 49.0 | 4.34e-01 | 100.0% | 70.8% |
| 5050610 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 49.0 | 4.20e-01 | 97.4% | 90.0% |
| 3985807 | 375.1.1.130 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 | 0.60 | 40.0 | 3.93e-01 | 71.8% | 60.0% |
| 3597599 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.60 | 49.0 | 3.80e-01 | 100.0% | 41.0% |
| 4440689 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.60 | 51.0 | 4.39e-01 | 100.0% | 72.3% |
| 2426645 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.59 | 42.0 | 3.88e-01 | 79.5% | 61.8% |
| 3505640 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.58 | 41.0 | 3.68e-01 | 84.6% | 50.0% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.58 | 42.0 | 3.27e-01 | 84.6% | 33.3% |
| 3482420 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 39.0 | 4.06e-01 | 74.4% | 100.0% |
| 3500033 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 41.0 | 3.86e-01 | 84.6% | 60.0% |
| 3040109 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.57 | 40.0 | 3.85e-01 | 84.6% | 63.8% |
| 4941366 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 38.0 | 3.79e-01 | 71.8% | 67.5% |
| 3553625 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 44.0 | 4.16e-01 | 100.0% | 74.5% |
| 5045429 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 40.0 | 3.24e-01 | 100.0% | 34.7% |
| 3208203 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.55 | 40.0 | 3.66e-01 | 84.6% | 54.5% |
| 3285877 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 41.0 | 2.69e-01 | 82.1% | 16.0% |
| 3907533 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.55 | 37.0 | 3.73e-01 | 71.8% | 67.5% |
| 3585214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 37.0 | 2.86e-01 | 71.8% | 30.0% |
| 4391824 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 45.0 | 2.81e-01 | 97.4% | 34.7% |
| 3585149 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 40.0 | 2.82e-01 | 94.9% | 46.7% |
| 4104975 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.50 | 41.0 | 2.43e-01 | 100.0% | 65.9% |
| 3636596 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 36.0 | 3.57e-01 | 100.0% | 86.0% |
D3
medium
residues 15-88_295-340