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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00629
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00629
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-187
Domain cluster:
rep: IMGVR_UViG_3300008007_000865-3300008007-Ga0100386_1000016247__D1-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01694.29 best | Rhomboid | 51.0 | 2.60e-13 | 77.8% | 92.3% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nr9A00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.81 | 76.0 | 7.40e-01 | 99.4% | 93.2% |
| 2xtuA00 | 1.20.1540.10 | Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like | 0.79 | 75.0 | 7.45e-01 | 100.0% | 98.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 27.0 | 3.73e-01 | 81.8% | 86.4% |
| 2is6A04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.55 | 29.0 | 3.03e-01 | 79.5% | 52.2% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.54 | 39.0 | 3.40e-01 | 74.4% | 87.4% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 41.0 | 3.45e-01 | 80.1% | 56.1% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 40.0 | 3.32e-01 | 79.5% | 92.1% |
| 8h4pA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 43.0 | 3.64e-01 | 87.5% | 56.0% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 44.0 | 3.79e-01 | 89.2% | 79.3% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 38.0 | 3.49e-01 | 77.8% | 81.5% |
| 8h72B01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 41.0 | 3.46e-01 | 87.5% | 55.0% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 40.0 | 3.35e-01 | 85.2% | 54.8% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954015 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.95 | 91.0 | 8.68e-01 | 98.3% | 93.8% |
| 3590444 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.88 | 85.0 | 7.70e-01 | 100.0% | 81.3% |
| 4079748 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.87 | 82.0 | 7.84e-01 | 97.2% | 91.8% |
| 3676512 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.87 | 83.0 | 7.60e-01 | 100.0% | 86.8% |
| 3988861 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 81.0 | 7.52e-01 | 98.3% | 86.0% |
| 3438721 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 81.0 | 7.61e-01 | 97.2% | 85.9% |
| 3643677 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 80.0 | 7.03e-01 | 96.6% | 87.8% |
| 3302941 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 80.0 | 7.55e-01 | 96.6% | 85.4% |
| 3379646 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 80.0 | 6.80e-01 | 96.6% | 79.6% |
| 4615926 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.86 | 82.0 | 8.13e-01 | 99.4% | 100.0% |
| 5078124 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.85 | 78.0 | 7.77e-01 | 94.9% | 96.7% |
| 3923227 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.85 | 77.0 | 7.49e-01 | 94.9% | 92.6% |
| 4988448 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 79.0 | 7.93e-01 | 96.6% | 98.3% |
| 3399386 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 81.0 | 7.84e-01 | 100.0% | 96.3% |
| 4029621 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 78.0 | 7.23e-01 | 96.6% | 87.0% |
| 3491023 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 80.0 | 7.01e-01 | 100.0% | 85.6% |
| 4027249 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 81.0 | 7.31e-01 | 100.0% | 84.0% |
| 5053424 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 79.0 | 7.77e-01 | 97.2% | 94.6% |
| 5014154 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 79.0 | 7.71e-01 | 98.3% | 95.8% |
| 3241943 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 78.0 | 7.15e-01 | 97.2% | 85.9% |
| 3248617 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 78.0 | 7.06e-01 | 97.2% | 84.2% |
| 4032972 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 80.0 | 7.82e-01 | 100.0% | 96.3% |
| 3934092 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.84 | 78.0 | 7.73e-01 | 98.9% | 94.4% |
| 3284826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 80.0 | 7.32e-01 | 99.4% | 80.9% |
| 4942502 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.84 | 79.0 | 7.41e-01 | 97.7% | 89.8% |
| 3496079 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 78.0 | 7.36e-01 | 97.7% | 93.7% |
| 3690311 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 68.0 | 6.04e-01 | 83.5% | 83.3% |
| 3631632 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 79.0 | 6.84e-01 | 99.4% | 78.8% |
| 4024520 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 79.0 | 7.08e-01 | 100.0% | 83.7% |
| 3577038 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 78.0 | 7.05e-01 | 99.4% | 85.2% |
| 5082662 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 77.0 | 7.17e-01 | 97.2% | 90.0% |
| 3969883 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.83 | 79.0 | 7.44e-01 | 100.0% | 96.6% |
| 3849112 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 78.0 | 6.90e-01 | 99.4% | 78.6% |
| 3067085 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.82 | 77.0 | 7.71e-01 | 97.7% | 98.9% |
| 4991388 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 77.0 | 7.65e-01 | 97.7% | 95.6% |
| 3392721 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 78.0 | 6.88e-01 | 98.9% | 77.1% |
| 4057139 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 77.0 | 7.60e-01 | 98.3% | 96.8% |
| 4946808 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 77.0 | 7.37e-01 | 97.7% | 97.9% |
| 3744831 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 78.0 | 6.76e-01 | 98.9% | 80.8% |
| 4954820 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 77.0 | 7.76e-01 | 97.7% | 99.4% |
| 4216967 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 76.0 | 6.94e-01 | 97.7% | 84.0% |
| 3600204 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.82 | 74.0 | 7.18e-01 | 95.5% | 96.9% |
| 3238747 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 76.0 | 7.54e-01 | 96.6% | 96.1% |
| 4025642 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.82 | 76.0 | 7.39e-01 | 97.2% | 98.9% |
| 3245826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 75.0 | 7.04e-01 | 96.6% | 85.7% |
| 3798293 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.81 | 74.0 | 6.87e-01 | 95.5% | 82.8% |
| 4025858 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 77.0 | 7.22e-01 | 100.0% | 93.3% |
| 4938105 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 73.0 | 7.50e-01 | 94.9% | 97.6% |
| 5013113 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.81 | 76.0 | 6.95e-01 | 99.4% | 97.3% |
| 3563907 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 77.0 | 6.72e-01 | 100.0% | 77.2% |
| 5011657 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 75.0 | 7.61e-01 | 98.9% | 98.9% |
| 5068311 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 68.0 | 6.98e-01 | 96.6% | 90.6% |
| 5066829 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 76.0 | 7.09e-01 | 98.9% | 97.6% |
| 5038864 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 75.0 | 7.12e-01 | 96.6% | 89.5% |
| 4247 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.81 | 76.0 | 7.45e-01 | 99.4% | 94.7% |
| 3845295 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 76.0 | 6.74e-01 | 100.0% | 94.2% |
| 3314315 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.80 | 75.0 | 7.19e-01 | 97.7% | 96.4% |
| 5022259 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 74.0 | 7.32e-01 | 97.2% | 97.8% |
| 4978747 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.80 | 74.0 | 7.46e-01 | 98.9% | 97.7% |
| 4982980 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.79 | 74.0 | 7.50e-01 | 97.7% | 100.0% |
| 3743438 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 72.0 | 6.98e-01 | 97.2% | 92.8% |
| 4962264 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 62.0 | 6.52e-01 | 82.4% | 96.9% |
| 3830489 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.78 | 73.0 | 7.07e-01 | 99.4% | 100.0% |
| 3782444 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.77 | 71.0 | 6.57e-01 | 97.7% | 94.9% |
| 5029116 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.76 | 70.0 | 6.97e-01 | 100.0% | 94.4% |
| 3495043 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.76 | 70.0 | 6.90e-01 | 97.7% | 100.0% |
| 3431805 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.74 | 67.0 | 6.72e-01 | 96.6% | 100.0% |
| 3697306 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.73 | 68.0 | 6.39e-01 | 100.0% | 98.6% |
| 3174214 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.72 | 67.0 | 6.71e-01 | 99.4% | 100.0% |
| 3819305 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.71 | 66.0 | 6.71e-01 | 98.9% | 99.4% |