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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00662
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00662
Identity
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-91
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hfkB00 | 1.20.120.1620 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 46.0 | 4.27e-01 | 73.8% | 88.8% |
| 1p65A00 | 6.10.140.90 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 29.0 | 3.27e-01 | 73.8% | 57.9% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.59 | 52.0 | 5.14e-01 | 100.0% | 92.9% |
| 7c5yA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 40.0 | 3.31e-01 | 72.5% | 83.7% |
| 4wpzA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 44.0 | 2.87e-01 | 83.7% | 68.2% |
| 4iy0A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.57 | 39.0 | 3.20e-01 | 97.5% | 37.5% |
| 5fl7G02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.56 | 43.0 | 3.27e-01 | 83.7% | 71.8% |
| 1eucB03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.55 | 41.0 | 3.36e-01 | 100.0% | 43.8% |
| 4lypB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 47.0 | 3.04e-01 | 100.0% | 41.2% |
| 1dl2A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.54 | 49.0 | 2.96e-01 | 100.0% | 19.2% |
| 4g10A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 49.0 | 4.08e-01 | 100.0% | 66.9% |
| 3vhlA02 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.53 | 46.0 | 4.10e-01 | 100.0% | 95.0% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.52 | 45.0 | 3.43e-01 | 97.5% | 64.4% |
| 1vm8B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 40.0 | 2.58e-01 | 87.5% | 56.9% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 44.0 | 3.67e-01 | 100.0% | 55.3% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.51 | 36.0 | 3.19e-01 | 77.5% | 90.8% |
| 2z0rA00 | 3.40.1350.90 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › Uncharacterised protein PF11572, DUF3234 | 0.50 | 41.0 | 3.90e-01 | 90.0% | 84.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3516405 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.83 | 66.0 | 4.19e-01 | 100.0% | 18.9% |
| 3358122 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.77 | 65.0 | 5.33e-01 | 100.0% | 52.1% |
| 3453219 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.76 | 65.0 | 4.50e-01 | 100.0% | 30.4% |
| 3691304 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.68 | 56.0 | 3.83e-01 | 100.0% | 26.8% |
| 3574264 | 109.4.1.213 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2 | 0.67 | 54.0 | 3.11e-01 | 100.0% | 9.1% |
| 3627597 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 55.0 | 3.50e-01 | 100.0% | 49.7% |
| 3972210 | 7564.1.1.1 ↗ | a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein | 0.61 | 42.0 | 3.18e-01 | 98.8% | 30.8% |
| 5069250 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.59 | 46.0 | 3.28e-01 | 85.0% | 82.4% |
| 3939322 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 50.0 | 3.03e-01 | 100.0% | 14.3% |
| 3839456 | 7564.1.1.1 ↗ | a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Flavoprotein | 0.56 | 36.0 | 2.82e-01 | 100.0% | 27.9% |
| 4611376 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 42.0 | 2.71e-01 | 81.2% | 42.3% |
| 4486718 | 109.4.1.501 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UME | 0.55 | 48.0 | 2.74e-01 | 100.0% | 11.7% |
| 5045354 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 49.0 | 3.25e-01 | 97.5% | 41.3% |
| 3229557 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.55 | 48.0 | 3.10e-01 | 100.0% | 62.3% |
| 2841957 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.54 | 42.0 | 2.89e-01 | 87.5% | 72.4% |
| 3337044 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.54 | 42.0 | 2.91e-01 | 90.0% | 65.7% |
| None | — | 0.54 | 40.0 | 2.34e-01 | 81.2% | 75.0% | |
| 5078666 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.54 | 41.0 | 2.82e-01 | 87.5% | 100.0% |
| 3397991 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.53 | 46.0 | 3.05e-01 | 100.0% | 25.9% |
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.53 | 40.0 | 3.72e-01 | 85.0% | 93.6% |
| 4250601 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.52 | 36.0 | 2.86e-01 | 71.2% | 48.8% |
| 3713212 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.52 | 44.0 | 3.07e-01 | 96.2% | 74.4% |
| 4497780 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.52 | 41.0 | 2.91e-01 | 91.3% | 53.7% |
| 4011959 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.52 | 41.0 | 3.10e-01 | 86.3% | 36.9% |
| 5017795 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 41.0 | 3.16e-01 | 87.5% | 85.4% |
| 3211111 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.51 | 45.0 | 2.90e-01 | 100.0% | 61.9% |
| 4301522 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.51 | 41.0 | 2.93e-01 | 91.3% | 50.0% |
| 5045589 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.51 | 41.0 | 3.24e-01 | 88.7% | 92.1% |
| 3244833 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.50 | 44.0 | 2.59e-01 | 100.0% | 29.4% |
| 3962443 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.50 | 44.0 | 3.57e-01 | 100.0% | 64.4% |
| 4570660 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 40.0 | 3.33e-01 | 87.5% | 93.1% |
| 4140256 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.50 | 40.0 | 3.11e-01 | 87.5% | 91.1% |