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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00683

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00683

Identity

Kingdom:
phage

Quality

73.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 154-200
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 47.0 4.22e-01 78.7% 54.9%
1qqtA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 43.0 3.17e-01 80.9% 52.9%
4b89A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 38.0 2.51e-01 74.5% 18.3%
2zj2A04 1.10.3380.20 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.53 37.0 2.65e-01 76.6% 69.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964678 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 46.0 4.17e-01 76.6% 53.8%
2057229 101.1.4.23 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin 0.60 41.0 3.71e-01 76.6% 49.3%
D2 medium residues 3-59
PDB
D3 medium residues 60-149
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 36.0 4.03e-01 86.7% 71.4%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 35.0 3.81e-01 87.8% 68.9%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 35.0 3.99e-01 87.8% 79.1%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.50 21.0 2.74e-01 72.2% 63.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968388 850.1.1.0 ↗ a+b three layers › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like › Hypothetical protein Ta1206-like 0.59 33.0 4.10e-01 87.8% 96.0%
4024949 102.1.1.26 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › GIDA_C 0.59 37.0 4.41e-01 76.7% 96.7%
3714090 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.52 37.0 2.35e-01 74.4% 38.9%