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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00746
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00746
Identity
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-162
Domain cluster:
rep: NC_019516.2__YP_007006061.1__F417_gp165__00072__D34-156
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09411.17 best | PagL | 29.5 | 1.00e-06 | 98.6% | 65.2% |
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.86 | 82.0 | 7.92e-01 | 100.0% | 99.3% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.83 | 58.0 | 6.61e-01 | 100.0% | 93.4% |
| 1p4tA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.78 | 75.0 | 7.16e-01 | 100.0% | 93.5% |
| 1bxwA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.76 | 71.0 | 6.54e-01 | 100.0% | 93.0% |
| 4fuvA00 | 2.40.160.170 | Mainly Beta › Beta Barrel › Porin › | 0.73 | 69.0 | 5.87e-01 | 100.0% | 96.7% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.73 | 64.0 | 6.18e-01 | 100.0% | 83.9% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.71 | 60.0 | 5.52e-01 | 100.0% | 71.8% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 58.0 | 5.41e-01 | 99.3% | 71.7% |
| 1wubA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.69 | 65.0 | 5.92e-01 | 100.0% | 94.3% |
| 1y0gA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.69 | 64.0 | 5.96e-01 | 100.0% | 98.2% |
| 6qwrA01 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.69 | 64.0 | 5.72e-01 | 100.0% | 98.9% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.69 | 63.0 | 6.22e-01 | 100.0% | 95.3% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.66 | 61.0 | 4.94e-01 | 100.0% | 96.0% |
| 3ef8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 46.0 | 4.54e-01 | 72.5% | 91.2% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.64 | 59.0 | 4.73e-01 | 100.0% | 92.2% |
| 4meeA00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.63 | 58.0 | 4.47e-01 | 100.0% | 86.5% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.63 | 58.0 | 4.55e-01 | 100.0% | 84.9% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.62 | 57.0 | 4.00e-01 | 99.3% | 73.5% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.60 | 54.0 | 4.41e-01 | 97.8% | 72.0% |
| 6wilA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.60 | 55.0 | 4.06e-01 | 100.0% | 95.7% |
| 3fidA00 | 2.40.128.140 | Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein | 0.58 | 53.0 | 4.15e-01 | 100.0% | 97.3% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.58 | 54.0 | 3.79e-01 | 99.3% | 98.1% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.57 | 52.0 | 4.76e-01 | 100.0% | 88.3% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 52.0 | 5.02e-01 | 100.0% | 91.5% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.56 | 51.0 | 4.25e-01 | 100.0% | 83.5% |
| 2pcsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 46.0 | 4.48e-01 | 99.3% | 79.6% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 51.0 | 4.60e-01 | 100.0% | 86.3% |
| 2f1cX00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.55 | 50.0 | 4.10e-01 | 100.0% | 85.3% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 48.0 | 4.69e-01 | 92.8% | 93.9% |
| 3b8lA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 47.0 | 4.76e-01 | 93.5% | 94.3% |
| 2ciqA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 42.0 | 3.39e-01 | 84.1% | 54.0% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 48.0 | 4.39e-01 | 95.7% | 91.0% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 48.0 | 4.23e-01 | 95.7% | 84.5% |
| 3gzrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 4.49e-01 | 89.9% | 87.9% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 4.53e-01 | 89.1% | 96.7% |
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.53 | 48.0 | 3.71e-01 | 98.6% | 97.7% |
| 3ehcB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 4.46e-01 | 91.3% | 92.2% |
| 5o16B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.53 | 40.0 | 3.22e-01 | 80.4% | 47.1% |
| 3a76A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 44.0 | 4.43e-01 | 91.3% | 92.1% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.51 | 47.0 | 4.02e-01 | 100.0% | 67.3% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 4.33e-01 | 89.1% | 92.9% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 46.0 | 4.43e-01 | 96.4% | 93.5% |
| 3sybA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 45.0 | 3.29e-01 | 99.3% | 96.1% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 45.0 | 3.29e-01 | 98.6% | 44.0% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 4.16e-01 | 92.0% | 81.2% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 4.35e-01 | 92.0% | 94.7% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980468 | 5084.1.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagL | 0.85 | 82.0 | 7.61e-01 | 100.0% | 91.5% |
| 3840002 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.82 | 78.0 | 6.97e-01 | 100.0% | 99.5% |
| 4197411 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.80 | 77.0 | 6.62e-01 | 100.0% | 93.0% |
| 3839919 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.80 | 77.0 | 6.38e-01 | 100.0% | 96.8% |
| 3385673 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.80 | 76.0 | 7.15e-01 | 100.0% | 88.7% |
| 3839188 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.80 | 75.0 | 6.14e-01 | 99.3% | 96.6% |
| 3839690 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.79 | 75.0 | 6.58e-01 | 100.0% | 97.4% |
| 4224449 | 5084.1.1.29 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 | 0.79 | 75.0 | 6.85e-01 | 100.0% | 93.7% |
| 3964096 | 5084.1.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity | 0.79 | 75.0 | 6.84e-01 | 100.0% | 83.4% |
| 3840004 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.79 | 74.0 | 6.30e-01 | 100.0% | 96.7% |
| 4552003 | 5084.1.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpW | 0.78 | 73.0 | 6.23e-01 | 100.0% | 90.0% |
| 4636309 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.77 | 74.0 | 6.20e-01 | 100.0% | 99.5% |
| 4299005 | 5084.1.1.21 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TSA | 0.77 | 74.0 | 6.49e-01 | 100.0% | 83.2% |
| 3838398 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.77 | 73.0 | 6.58e-01 | 100.0% | 87.8% |
| 3838382 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.77 | 72.0 | 5.76e-01 | 100.0% | 84.6% |
| 4417262 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.77 | 72.0 | 6.73e-01 | 100.0% | 93.4% |
| 4099548 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.76 | 72.0 | 7.01e-01 | 100.0% | 99.3% |
| 200662 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.76 | 72.0 | 6.13e-01 | 100.0% | 95.7% |
| 4116729 | 5084.1.1.6 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF | 0.73 | 68.0 | 6.33e-01 | 100.0% | 87.1% |
| 3840054 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.73 | 62.0 | 6.21e-01 | 90.6% | 99.3% |
| 3970312 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.73 | 68.0 | 6.19e-01 | 100.0% | 95.0% |
| 3975352 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.73 | 68.0 | 6.60e-01 | 100.0% | 97.4% |
| 4270236 | 5084.1.1.7 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PagP | 0.71 | 66.0 | 6.19e-01 | 100.0% | 84.2% |
| None | — | 0.69 | 63.0 | 6.22e-01 | 100.0% | 95.3% | |
| 145377 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.68 | 63.0 | 6.11e-01 | 100.0% | 94.1% |
| 3980016 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.67 | 59.0 | 5.89e-01 | 95.7% | 97.1% |
| 4521584 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.64 | 59.0 | 4.49e-01 | 100.0% | 82.8% |
| 3967388 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.64 | 59.0 | 4.46e-01 | 100.0% | 84.8% |
| 4195943 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 58.0 | 4.39e-01 | 100.0% | 87.2% |
| 1294369 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 58.0 | 4.47e-01 | 100.0% | 86.5% |
| 885 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 58.0 | 4.55e-01 | 100.0% | 84.9% |
| 4136508 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.63 | 58.0 | 4.33e-01 | 100.0% | 87.6% |
| 3971437 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.62 | 57.0 | 4.91e-01 | 100.0% | 70.6% |
| 4162922 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.62 | 56.0 | 4.35e-01 | 100.0% | 83.2% |
| 3976052 | 5084.4.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › PLA1 | 0.60 | 54.0 | 4.39e-01 | 97.8% | 69.5% |
| 3964572 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.60 | 54.0 | 4.25e-01 | 100.0% | 81.9% |
| 4416793 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.58 | 54.0 | 3.77e-01 | 98.6% | 99.5% |
| 3980621 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.58 | 53.0 | 4.56e-01 | 99.3% | 98.6% |
| 4200093 | 5084.5.1.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_O_P | 0.58 | 53.0 | 3.80e-01 | 99.3% | 92.7% |
| 4113659 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.57 | 52.0 | 3.79e-01 | 99.3% | 94.9% |
| 3976425 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.56 | 52.0 | 4.51e-01 | 100.0% | 98.6% |
| 4582939 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.56 | 52.0 | 3.90e-01 | 99.3% | 75.3% |
| 4368670 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.56 | 51.0 | 3.68e-01 | 100.0% | 96.0% |
| 3395729 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 49.0 | 4.66e-01 | 98.6% | 81.2% |
| 3975988 | 5084.3.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta | 0.56 | 51.0 | 4.14e-01 | 100.0% | 79.6% |
| 3559721 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.56 | 50.0 | 4.57e-01 | 99.3% | 83.8% |
| 4984404 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.55 | 45.0 | 4.45e-01 | 100.0% | 81.8% |
| 1806543 | 5084.5.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel | 0.55 | 47.0 | 3.71e-01 | 93.5% | 47.9% |
| 4662377 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.55 | 50.0 | 3.88e-01 | 100.0% | 75.5% |
| 3985117 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.53 | 46.0 | 3.02e-01 | 92.8% | 35.3% |
| 3917130 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.53 | 47.0 | 4.05e-01 | 96.4% | 60.5% |
| 3250241 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.53 | 48.0 | 4.36e-01 | 100.0% | 77.8% |
| 3952882 | 331.3.1.27 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 | 0.52 | 47.0 | 4.36e-01 | 99.3% | 83.3% |
| 5010189 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 41.0 | 4.10e-01 | 99.3% | 83.5% |
| 4974050 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.50 | 43.0 | 4.35e-01 | 89.9% | 94.8% |