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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00751

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00751

Identity

Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-95
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.79 54.0 4.62e-01 70.3% 71.0%
5iduA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.77 54.0 4.87e-01 71.4% 82.5%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 61.0 4.63e-01 100.0% 63.6%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 60.0 5.21e-01 100.0% 79.6%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.66 58.0 4.61e-01 100.0% 52.6%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.63 55.0 4.68e-01 100.0% 69.9%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.60 41.0 3.72e-01 70.3% 81.1%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.60 51.0 4.35e-01 95.6% 70.1%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.60 52.0 4.72e-01 98.9% 96.8%
7dvqK01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 51.0 4.26e-01 100.0% 60.7%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 46.0 3.73e-01 93.4% 92.5%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 3.76e-01 95.6% 81.1%
5l0wB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 47.0 4.15e-01 96.7% 65.9%
5h7kA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.49e-01 100.0% 65.3%
2g3bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 45.0 3.60e-01 95.6% 85.0%
2radA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.52 39.0 3.51e-01 78.0% 81.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3650341 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 65.0 4.67e-01 100.0% 42.4%
3737232 109.4.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF 0.69 62.0 4.04e-01 100.0% 25.7%
3823646 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.68 60.0 5.22e-01 100.0% 80.7%
3741923 109.4.1.335 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SEN1_N 0.67 59.0 4.70e-01 100.0% 67.9%
3239827 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 4.37e-01 100.0% 73.3%
3505768 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 55.0 4.36e-01 100.0% 56.5%
3610735 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.63 55.0 3.96e-01 100.0% 33.9%
3742412 109.4.1.123 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U3_assoc_6 0.62 54.0 3.45e-01 100.0% 38.1%
3506555 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 51.0 4.80e-01 92.3% 80.0%
3898985 109.4.1.554 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Neurochondrin 0.61 52.0 3.59e-01 100.0% 41.1%
3789528 109.4.1.335 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SEN1_N 0.60 51.0 3.22e-01 100.0% 24.5%
3695092 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 52.0 4.12e-01 100.0% 55.1%
4020083 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.51 40.0 3.49e-01 83.5% 91.4%
D2 high residues 110-178
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.73 52.0 4.39e-01 100.0% 45.2%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 45.0 3.15e-01 100.0% 21.0%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.64 47.0 3.98e-01 78.3% 99.1%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.62 50.0 4.19e-01 89.9% 100.0%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 3.87e-01 100.0% 52.0%
1j77A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.61 53.0 3.84e-01 97.1% 42.7%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.60 49.0 4.66e-01 92.8% 84.7%
2xi9A03 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 43.0 3.84e-01 100.0% 53.5%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.59 47.0 3.11e-01 88.4% 58.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.58 50.0 4.60e-01 98.6% 73.6%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.58 45.0 4.02e-01 84.1% 69.7%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 42.0 3.71e-01 81.2% 62.5%
3byiD00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.57 49.0 3.57e-01 98.6% 63.2%
2k0nA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.57 47.0 4.45e-01 92.8% 78.8%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 41.0 3.99e-01 98.6% 69.2%
3zheC01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 49.0 3.65e-01 98.6% 38.0%
3au5A03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.56 46.0 3.92e-01 97.1% 56.2%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.54 48.0 4.37e-01 100.0% 85.9%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 49.0 4.47e-01 100.0% 78.4%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.53 42.0 4.14e-01 100.0% 80.5%
2g5cB02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.53 46.0 4.00e-01 100.0% 72.7%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.52 41.0 3.62e-01 88.4% 58.1%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.52 37.0 3.48e-01 84.1% 58.7%
4hstA01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.52 38.0 3.11e-01 82.6% 55.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009863 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.77 64.0 5.49e-01 100.0% 58.3%
3649574 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.74 68.0 5.74e-01 100.0% 67.0%
4032972 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.73 63.0 4.61e-01 97.1% 35.3%
3740332 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.71 59.0 5.60e-01 89.9% 82.5%
4992540 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 53.0 5.30e-01 92.8% 94.3%
3512845 109.4.1.514 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps54 0.65 57.0 3.56e-01 100.0% 31.0%
3367150 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.64 56.0 5.09e-01 100.0% 75.8%
4031489 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.64 43.0 4.21e-01 82.6% 64.0%
3304034 5050.1.1.42 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › GDT1 0.63 51.0 3.63e-01 91.3% 94.0%
2806489 632.19.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › RICH 0.62 41.0 3.85e-01 76.8% 55.3%
3900434 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.62 49.0 4.51e-01 89.9% 67.4%
3492568 1128.1.1.2 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.62 48.0 4.65e-01 88.4% 83.7%
4033036 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.61 41.0 4.04e-01 82.6% 64.0%
3199872 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.61 54.0 4.82e-01 100.0% 72.0%
4935481 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.60 48.0 4.17e-01 88.4% 57.1%
3386172 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.60 44.0 3.98e-01 81.2% 59.0%
5028679 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.60 49.0 4.30e-01 89.9% 73.8%
2122153 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.59 48.0 4.47e-01 88.4% 74.4%
4033044 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.58 39.0 3.82e-01 78.3% 64.0%
3425710 109.1.1.36 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N 0.58 49.0 3.44e-01 97.1% 53.4%
5002237 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.58 45.0 3.63e-01 100.0% 43.7%
5048577 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.57 49.0 4.74e-01 100.0% 97.5%
4371007 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.57 49.0 4.69e-01 100.0% 83.5%
3389549 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.57 50.0 4.62e-01 100.0% 81.1%
4105842 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 50.0 4.58e-01 100.0% 82.2%
4426344 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.55 46.0 4.63e-01 98.6% 94.1%
3598778 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 47.0 4.74e-01 100.0% 98.6%
4279089 7094.1.1.3 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C 0.54 44.0 3.75e-01 100.0% 54.2%
3507547 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.54 48.0 4.79e-01 100.0% 100.0%
3715173 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 46.0 4.03e-01 100.0% 69.1%
4304782 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.53 46.0 4.36e-01 98.6% 82.4%
3816224 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.53 43.0 4.36e-01 100.0% 87.1%
3856853 101.1.1.53 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BEN 0.52 47.0 4.07e-01 100.0% 76.2%
3961212 101.1.9.104 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ad_Cy_reg 0.52 43.0 3.99e-01 89.9% 70.6%
3169408 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.52 43.0 4.33e-01 100.0% 88.6%
3393967 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.52 41.0 3.80e-01 91.3% 96.8%
3659895 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.51 43.0 3.57e-01 97.1% 93.8%
3230949 103.4.1.1 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.51 37.0 3.65e-01 79.7% 80.0%
3723084 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.51 42.0 4.26e-01 95.7% 98.6%
3477131 101.1.1.227 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_NOL4_2nd 0.51 44.0 4.41e-01 98.6% 95.7%