←Back to structures
S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00792
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00792
Identity
- Kingdom:
- phage
Quality
53.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-44_148-196
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.85 | 55.0 | 6.64e-01 | 94.0% | 100.0% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.82 | 54.0 | 6.35e-01 | 94.0% | 100.0% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.81 | 55.0 | 5.72e-01 | 98.5% | 77.0% |
| 4epcA02 | 2.30.30.170 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 40.0 | 3.93e-01 | 91.0% | 47.9% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 49.0 | 4.18e-01 | 94.0% | 42.5% |
| 1ebdA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.74 | 43.0 | 3.47e-01 | 86.6% | 32.2% |
| 3rn5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 53.0 | 4.80e-01 | 100.0% | 56.5% |
| 2ivdB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 44.0 | 3.22e-01 | 86.6% | 26.2% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.65 | 37.0 | 3.92e-01 | 98.5% | 62.3% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.62 | 33.0 | 3.86e-01 | 80.6% | 73.9% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.61 | 38.0 | 3.39e-01 | 85.1% | 43.2% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.60 | 39.0 | 4.22e-01 | 98.5% | 81.5% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.59 | 37.0 | 3.75e-01 | 85.1% | 64.2% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 37.0 | 4.06e-01 | 86.6% | 83.0% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.57 | 41.0 | 3.72e-01 | 91.0% | 56.7% |
| 1bf3A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 37.0 | 2.57e-01 | 85.1% | 19.2% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.56 | 41.0 | 3.27e-01 | 77.6% | 73.9% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 31.0 | 3.31e-01 | 74.6% | 58.9% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 37.0 | 2.27e-01 | 100.0% | 9.9% |
| 1sb2B00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.55 | 41.0 | 3.45e-01 | 82.1% | 46.0% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.55 | 46.0 | 3.51e-01 | 92.5% | 44.4% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.77e-01 | 83.6% | 89.2% |
| 4pifA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.52 | 43.0 | 3.43e-01 | 92.5% | 75.5% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 30.0 | 3.06e-01 | 88.1% | 54.7% |
| 3mjgB00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 39.0 | 3.53e-01 | 89.6% | 89.1% |
| 4jj0B00 | 2.30.42.60 | Mainly Beta › Roll › Pdz3 Domain › | 0.50 | 39.0 | 2.82e-01 | 82.1% | 31.7% |
| 4depC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.21e-01 | 77.6% | 63.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944153 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.85 | 61.0 | 5.05e-01 | 100.0% | 45.5% |
| 4304764 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.83 | 60.0 | 4.81e-01 | 100.0% | 42.0% |
| 3164388 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.78 | 56.0 | 5.72e-01 | 100.0% | 76.9% |
| 4877512 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.78 | 52.0 | 5.65e-01 | 100.0% | 82.1% |
| 5044263 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 48.0 | 4.73e-01 | 94.0% | 64.3% |
| 4989747 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 60.0 | 6.12e-01 | 98.5% | 95.4% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.68 | 36.0 | 3.37e-01 | 88.1% | 43.8% |
| 3416068 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.64 | 40.0 | 3.06e-01 | 85.1% | 27.1% |
| 3939706 | 11.1.1.798 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_1st | 0.62 | 45.0 | 3.34e-01 | 77.6% | 48.2% |
| 3571716 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.55 | 46.0 | 4.28e-01 | 100.0% | 83.3% |
| 4958320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 3.04e-01 | 77.6% | 65.8% |
| 5024590 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.53 | 41.0 | 2.70e-01 | 88.1% | 100.0% |
| 3768242 | 11.1.1.615 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ZP2_3rd | 0.53 | 39.0 | 3.37e-01 | 77.6% | 77.0% |
| 4406666 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.52 | 42.0 | 3.09e-01 | 88.1% | 44.0% |
| 4978195 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 36.0 | 2.77e-01 | 79.1% | 81.6% |