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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00827
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00827
Identity
- Kingdom:
- phage
Quality
59.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-173
D2
medium
residues 220-279
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dd9A03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.65 | 52.0 | 5.27e-01 | 100.0% | 91.5% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.64 | 54.0 | 4.22e-01 | 100.0% | 53.1% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 48.0 | 4.49e-01 | 100.0% | 68.4% |
| 2imiB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 49.0 | 3.88e-01 | 100.0% | 53.6% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.58 | 44.0 | 3.73e-01 | 100.0% | 45.7% |
| 1r5aA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 49.0 | 3.87e-01 | 100.0% | 54.4% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.57 | 48.0 | 3.92e-01 | 100.0% | 53.2% |
| 6oh6A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 48.0 | 3.10e-01 | 100.0% | 32.5% |
| 5ymrC00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 45.0 | 2.57e-01 | 100.0% | 15.6% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 47.0 | 3.93e-01 | 100.0% | 66.1% |
| 4h9nC00 | 1.20.58.2170 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 3.05e-01 | 96.7% | 27.3% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 43.0 | 4.11e-01 | 100.0% | 85.3% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 42.0 | 3.46e-01 | 93.3% | 63.2% |
| 3e0zA00 | 1.20.58.1400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Domain of unknown function DUF3837 | 0.51 | 40.0 | 3.53e-01 | 96.7% | 95.3% |
| 1s6dA01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.51 | 41.0 | 3.82e-01 | 98.3% | 85.9% |
| 2p35A02 | 1.10.150.290 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 35.0 | 3.42e-01 | 75.0% | 65.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3453526 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.64 | 50.0 | 4.04e-01 | 100.0% | 43.2% |
| 3498448 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.61 | 52.0 | 4.83e-01 | 100.0% | 83.7% |
| 4655422 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.59 | 47.0 | 3.58e-01 | 95.0% | 75.3% |
| 4125755 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.59 | 50.0 | 2.89e-01 | 98.3% | 13.6% |
| 3710645 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 46.0 | 2.68e-01 | 100.0% | 8.5% |
| 3658143 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 2.96e-01 | 100.0% | 18.6% |
| 5024796 | 101.1.2.643 ↗ | alpha arrays › HTH › HTH › winged helix domain › AAA_assoc_C | 0.56 | 44.0 | 3.44e-01 | 91.7% | 91.3% |
| 3701680 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.55 | 44.0 | 3.87e-01 | 96.7% | 62.6% |
| 3721219 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.54 | 43.0 | 3.45e-01 | 100.0% | 42.2% |
| 3848085 | 3736.1.1.1 ↗ | alpha superhelices › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4 helical domain HD2 › NLRC4_HD2 | 0.53 | 45.0 | 3.87e-01 | 100.0% | 95.2% |
| 4027904 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 43.0 | 3.69e-01 | 100.0% | 57.3% |
| 3933764 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.52 | 41.0 | 3.65e-01 | 96.7% | 57.0% |
| 3577099 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.52 | 43.0 | 3.28e-01 | 98.3% | 47.1% |
| 3615532 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.84e-01 | 95.0% | 70.0% |
| 3487260 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.51 | 39.0 | 2.82e-01 | 88.3% | 53.5% |
| 4498704 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.51 | 41.0 | 3.34e-01 | 100.0% | 44.6% |
D3
medium
residues 280-372