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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00866

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00866

Identity

Kingdom:
phage

Quality

87.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61_75-164
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 39.0 4.69e-01 100.0% 98.9%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 37.0 4.42e-01 100.0% 97.9%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 4.58e-01 100.0% 99.1%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 39.0 4.51e-01 100.0% 100.0%
4mjkA00 3.30.70.3120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 50.0 4.24e-01 100.0% 60.9%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 28.0 3.26e-01 100.0% 67.3%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.55e-01 98.7% 86.8%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066096 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.73 69.0 5.92e-01 100.0% 87.7%
4969503 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.72 68.0 6.09e-01 99.3% 95.0%
5077240 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.71 67.0 5.14e-01 100.0% 98.7%
4969690 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.71 67.0 5.67e-01 100.0% 81.7%
5021424 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.71 63.0 5.34e-01 100.0% 60.9%
4967166 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.70 65.0 5.49e-01 100.0% 70.0%
5075411 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.69 57.0 5.04e-01 100.0% 61.4%
5004209 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.69 65.0 5.08e-01 100.0% 70.7%
4984491 304.139.1.0 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related 0.68 64.0 6.06e-01 100.0% 96.0%
4928785 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.68 59.0 5.10e-01 100.0% 60.9%
4093127 304.158.1.0 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs 0.68 62.0 5.29e-01 100.0% 64.6%
4946705 304.158.1.0 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs 0.67 63.0 5.28e-01 100.0% 62.4%
5017739 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.67 63.0 5.22e-01 100.0% 70.4%
4234646 304.139.1.1 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR 0.67 62.0 4.81e-01 100.0% 79.2%
4583752 304.158.1.0 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs 0.67 63.0 5.56e-01 99.3% 73.7%
4200050 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.67 62.0 5.12e-01 100.0% 63.9%
5071665 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.66 62.0 5.19e-01 100.0% 61.6%
4996327 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.66 62.0 5.21e-01 100.0% 65.3%
4989910 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.66 61.0 5.27e-01 100.0% 66.7%
5078344 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.65 60.0 5.30e-01 100.0% 89.7%
2388895 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.64 58.0 4.96e-01 99.3% 64.3%
5005974 304.51.1.6 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.64 59.0 5.01e-01 98.7% 91.1%
2984014 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.64 60.0 5.34e-01 100.0% 86.1%
4850545 304.158.1.0 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs 0.63 58.0 5.13e-01 100.0% 70.8%
5083152 304.158.1.2 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs › Cas_Cas5d 0.63 58.0 5.15e-01 100.0% 77.1%
4514238 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.61 34.0 4.36e-01 98.7% 100.0%
5037640 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.61 57.0 5.01e-01 98.7% 92.4%
4955149 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.59 55.0 4.97e-01 100.0% 83.1%
4944551 304.51.1.6 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.59 54.0 4.56e-01 98.0% 97.4%
5077659 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.59 41.0 4.65e-01 100.0% 97.3%
4943569 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.58 40.0 4.65e-01 100.0% 99.0%
5077521 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.57 53.0 4.68e-01 100.0% 81.4%
2756432 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.57 40.0 4.18e-01 100.0% 77.1%
3270372 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.57 39.0 4.40e-01 100.0% 91.3%
3598857 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.56 40.0 4.37e-01 100.0% 89.2%
3786547 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.56 38.0 4.40e-01 100.0% 98.1%
3608683 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.56 38.0 4.08e-01 100.0% 80.0%
3597932 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 35.0 4.22e-01 99.3% 100.0%
4956130 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 30.0 3.52e-01 99.3% 81.9%
D2 medium residues 62-74_165-213
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.63 43.0 4.23e-01 72.6% 88.1%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.86e-01 75.8% 74.4%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.59 41.0 3.86e-01 74.2% 73.1%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.58 40.0 3.76e-01 74.2% 78.0%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 44.0 3.96e-01 87.1% 73.9%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 50.0 4.56e-01 100.0% 88.1%
2l9wA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 41.0 3.47e-01 80.6% 67.6%
1utaA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.55 39.0 3.67e-01 75.8% 79.2%
3thxB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.55 44.0 3.56e-01 98.4% 44.3%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 46.0 4.46e-01 98.4% 91.4%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 41.0 3.39e-01 87.1% 54.3%
2qsfA04 3.30.70.2460 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Rad4, beta-hairpin domain BHD3 0.54 40.0 3.88e-01 80.6% 84.3%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.54 41.0 3.61e-01 88.7% 70.9%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 41.0 3.37e-01 88.7% 58.3%
1ewqB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.52 41.0 3.49e-01 96.8% 49.2%
1e3mA01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.52 43.0 3.54e-01 96.8% 49.6%
2qnkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 2.91e-01 100.0% 44.4%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 3.20e-01 87.1% 56.3%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.52 42.0 3.94e-01 96.8% 97.6%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.58e-01 72.6% 93.7%
2o8bB01 3.40.1170.10 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I 0.52 41.0 3.18e-01 96.8% 50.6%
2hrvA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 33.0 3.59e-01 72.6% 95.5%
1yfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.51 42.0 2.88e-01 100.0% 67.3%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 40.0 3.74e-01 93.5% 95.2%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4819807 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.65 46.0 4.36e-01 77.4% 96.2%
4042212 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.63 45.0 3.61e-01 75.8% 52.8%
5035014 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.61 43.0 4.17e-01 75.8% 74.3%
5081186 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.60 43.0 4.05e-01 75.8% 82.7%
5033078 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.59 42.0 4.05e-01 75.8% 90.0%
138898 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.59 41.0 4.19e-01 74.2% 93.2%
4940609 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.58 41.0 3.72e-01 74.2% 71.8%
4027737 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.58 45.0 3.42e-01 96.8% 32.9%
4599928 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 41.0 4.09e-01 75.8% 95.4%
5082595 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.58 40.0 4.02e-01 74.2% 93.8%
4940258 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 40.0 3.97e-01 74.2% 90.8%
4064296 304.24.1.25 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF2129 0.57 40.0 3.89e-01 74.2% 74.3%
4034087 304.8.1.24 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.57 40.0 3.81e-01 74.2% 69.3%
4157124 304.8.1.24 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.57 40.0 3.95e-01 74.2% 80.0%
4065065 304.8.1.24 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.57 39.0 3.86e-01 74.2% 74.3%
5037946 304.8.1.7 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.57 39.0 3.74e-01 75.8% 75.6%
4081991 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 39.0 3.98e-01 74.2% 95.0%
3489252 7033.1.1.0 a+b complex topology › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 0.56 43.0 2.81e-01 88.7% 31.6%
3553199 7033.1.1.1 a+b complex topology › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 › Ribonuc_P_40 0.56 44.0 2.79e-01 90.3% 77.4%
5031157 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.55 39.0 3.87e-01 75.8% 95.4%
5022487 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 37.0 3.84e-01 72.6% 100.0%
4946672 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.55 38.0 3.83e-01 75.8% 78.5%
3355928 242.3.1.0 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I 0.55 43.0 3.79e-01 98.4% 55.2%
4943694 242.3.1.3 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_II 0.54 42.0 3.65e-01 96.8% 52.7%
4934080 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 45.0 3.51e-01 100.0% 90.0%
3443621 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.53 44.0 3.43e-01 100.0% 58.1%
5055137 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 43.0 3.42e-01 96.8% 84.0%
4355700 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 43.0 2.89e-01 100.0% 64.8%
3781824 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.53 42.0 3.52e-01 96.8% 49.2%
4165863 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.53 45.0 3.59e-01 100.0% 74.1%
4969652 242.3.1.0 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I 0.53 43.0 3.75e-01 96.8% 58.1%
4404464 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.52 42.0 3.61e-01 96.8% 53.6%
4003030 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.51 35.0 3.17e-01 74.2% 73.7%