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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00892
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00892
Identity
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-94
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.76 | 67.0 | 6.69e-01 | 100.0% | 93.8% |
| 2ze7A02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.75 | 44.0 | 3.99e-01 | 98.7% | 45.1% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.75 | 57.0 | 5.96e-01 | 100.0% | 90.1% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.74 | 67.0 | 6.40e-01 | 100.0% | 87.8% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.71 | 55.0 | 5.23e-01 | 82.3% | 76.1% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.66 | 54.0 | 5.32e-01 | 100.0% | 85.1% |
| 3psfA02 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.64 | 56.0 | 4.66e-01 | 100.0% | 56.9% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 57.0 | 5.54e-01 | 100.0% | 89.7% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.64 | 43.0 | 4.19e-01 | 70.9% | 91.2% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 53.0 | 4.93e-01 | 92.4% | 78.8% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.62 | 45.0 | 4.22e-01 | 77.2% | 72.7% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 48.0 | 4.01e-01 | 83.5% | 95.0% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.62 | 52.0 | 4.31e-01 | 97.5% | 85.7% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 53.0 | 4.42e-01 | 100.0% | 64.8% |
| 1eqfA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 52.0 | 4.51e-01 | 98.7% | 84.8% |
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 52.0 | 3.93e-01 | 98.7% | 52.0% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 42.0 | 3.50e-01 | 74.7% | 91.2% |
| 1v07A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 51.0 | 4.63e-01 | 100.0% | 82.7% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 51.0 | 4.33e-01 | 100.0% | 75.2% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.58 | 51.0 | 4.64e-01 | 97.5% | 75.5% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 49.0 | 4.60e-01 | 100.0% | 93.3% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 50.0 | 4.19e-01 | 100.0% | 66.0% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.57 | 42.0 | 3.58e-01 | 79.7% | 62.6% |
| 1pujA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.56 | 33.0 | 3.20e-01 | 89.9% | 50.5% |
| 3f6tA02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.56 | 40.0 | 3.41e-01 | 78.5% | 58.5% |
| 4f7nB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 44.0 | 3.81e-01 | 89.9% | 57.4% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.56 | 49.0 | 4.37e-01 | 98.7% | 96.4% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 43.0 | 3.55e-01 | 87.3% | 82.7% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.54 | 39.0 | 4.04e-01 | 74.7% | 90.4% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.54 | 46.0 | 3.06e-01 | 96.2% | 89.8% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 37.0 | 3.66e-01 | 77.2% | 75.9% |
| 4m9aA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 39.0 | 3.47e-01 | 82.3% | 60.5% |
| 3m4uB00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 44.0 | 3.07e-01 | 98.7% | 69.3% |
| 1nxuA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.51 | 42.0 | 4.25e-01 | 94.9% | 91.1% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 44.0 | 3.64e-01 | 98.7% | 84.6% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 35.0 | 3.64e-01 | 73.4% | 88.7% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 42.0 | 3.05e-01 | 100.0% | 57.8% |
| 1z2iA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.50 | 44.0 | 4.22e-01 | 100.0% | 94.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3606961 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.79 | 70.0 | 5.76e-01 | 100.0% | 75.2% |
| 3596111 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.73 | 65.0 | 4.86e-01 | 100.0% | 48.7% |
| 3613072 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.73 | 64.0 | 4.93e-01 | 100.0% | 51.4% |
| 1088836 | 101.38.1.0 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep | 0.71 | 55.0 | 4.73e-01 | 82.3% | 57.4% |
| 55657 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.69 | 51.0 | 4.87e-01 | 77.2% | 97.8% |
| 3661711 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.69 | 58.0 | 5.78e-01 | 100.0% | 91.3% |
| 3737690 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.66 | 52.0 | 4.75e-01 | 96.2% | 63.8% |
| 3967708 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.66 | 57.0 | 5.55e-01 | 98.7% | 100.0% |
| 3335763 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.65 | 52.0 | 4.64e-01 | 97.5% | 61.8% |
| 3992094 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.65 | 57.0 | 4.36e-01 | 100.0% | 70.5% |
| 2075033 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.65 | 55.0 | 5.57e-01 | 96.2% | 100.0% |
| 3938622 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.64 | 50.0 | 4.18e-01 | 86.1% | 96.5% |
| 4429275 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.64 | 51.0 | 3.75e-01 | 87.3% | 62.8% |
| 154671 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.64 | 57.0 | 4.05e-01 | 100.0% | 33.9% |
| 3921719 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 55.0 | 5.34e-01 | 100.0% | 98.9% |
| 3994728 | 7094.1.1.3 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C | 0.63 | 52.0 | 4.35e-01 | 92.4% | 62.9% |
| 4279089 | 7094.1.1.3 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C | 0.62 | 52.0 | 4.54e-01 | 92.4% | 73.3% |
| 3870735 | 601.25.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › OPA1_C | 0.62 | 51.0 | 4.42e-01 | 92.4% | 70.4% |
| 3830022 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.61 | 49.0 | 4.46e-01 | 89.9% | 70.0% |
| 3885749 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.60 | 42.0 | 4.33e-01 | 84.8% | 78.7% |
| 3737948 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.60 | 43.0 | 4.75e-01 | 84.8% | 98.3% |
| 3178033 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.60 | 43.0 | 4.67e-01 | 79.7% | 93.8% |
| 3839645 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.59 | 44.0 | 3.27e-01 | 79.7% | 91.2% |
| 4460349 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.59 | 46.0 | 3.68e-01 | 87.3% | 88.2% |
| 51182 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.59 | 51.0 | 4.31e-01 | 100.0% | 75.2% |
| 3293 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.58 | 51.0 | 4.33e-01 | 100.0% | 75.2% |
| 3782341 | 171.1.1.5 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase | 0.58 | 40.0 | 3.26e-01 | 73.4% | 68.8% |
| 4070521 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.58 | 44.0 | 3.60e-01 | 83.5% | 90.3% |
| 5057187 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.57 | 48.0 | 3.19e-01 | 100.0% | 22.4% |
| 3965562 | 601.33.1.22 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › HemX | 0.55 | 38.0 | 3.65e-01 | 73.4% | 72.6% |
| 4246457 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.55 | 38.0 | 4.09e-01 | 73.4% | 87.7% |
| 3785050 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.55 | 43.0 | 3.65e-01 | 88.6% | 74.3% |
| 5027495 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.54 | 38.0 | 3.71e-01 | 72.2% | 92.9% |
| 3393637 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.51 | 45.0 | 4.01e-01 | 100.0% | 89.6% |