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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00901

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00901

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-96
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.70 50.0 5.26e-01 97.9% 82.8%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.69 44.0 3.64e-01 99.0% 36.1%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.67 56.0 5.25e-01 99.0% 73.7%
3sngA00 1.10.575.10 Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease 0.67 46.0 3.37e-01 70.8% 96.6%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 50.0 5.34e-01 85.4% 94.0%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 37.0 4.01e-01 94.8% 65.4%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.65 46.0 4.91e-01 97.9% 87.7%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.63 55.0 5.06e-01 100.0% 89.2%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.63 55.0 4.97e-01 95.8% 71.3%
7pjdC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 53.0 4.49e-01 96.9% 66.1%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 43.0 3.04e-01 74.0% 57.1%
1nyaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 52.0 4.31e-01 96.9% 93.8%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.60 37.0 3.50e-01 75.0% 52.2%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 37.0 4.21e-01 71.9% 84.7%
5mypA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.58 42.0 3.01e-01 75.0% 59.9%
1qtqA03 1.10.1160.10 Mainly Alpha › Orthogonal Bundle › Glutamyl-tRNA Synthetase; domain 2 › Glutamyl-trna Synthetase; Domain 2 0.58 45.0 4.95e-01 84.4% 100.0%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 44.0 4.78e-01 82.3% 100.0%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 49.0 4.07e-01 96.9% 64.4%
5z7cA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 44.0 3.72e-01 87.5% 86.4%
4h3sA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 46.0 3.06e-01 88.5% 85.3%
2vvlA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.55 40.0 3.14e-01 78.1% 77.9%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 47.0 3.12e-01 97.9% 74.0%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 47.0 4.64e-01 99.0% 100.0%
3zukA02 1.10.1380.10 Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 0.54 49.0 3.35e-01 100.0% 42.1%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 45.0 4.65e-01 94.8% 98.9%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 45.0 4.50e-01 95.8% 100.0%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.52 41.0 3.60e-01 86.5% 65.3%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 39.0 3.91e-01 95.8% 79.2%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 44.0 3.84e-01 100.0% 73.7%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.51 38.0 3.46e-01 80.2% 88.0%
1eyvB00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 39.0 3.56e-01 97.9% 60.2%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.50 37.0 4.03e-01 76.0% 96.1%
2rekA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 40.0 3.31e-01 85.4% 89.5%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.50 41.0 3.87e-01 97.9% 73.7%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946182 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.93 80.0 8.26e-01 100.0% 95.6%
3980780 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.92 80.0 8.24e-01 100.0% 95.6%
3989376 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.92 83.0 8.00e-01 99.0% 85.7%
4211419 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 87.0 8.09e-01 100.0% 86.1%
4895331 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 77.0 8.00e-01 92.7% 94.4%
4957090 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 81.0 8.21e-01 100.0% 94.7%
4934727 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.91 81.0 8.18e-01 100.0% 94.7%
5066162 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 77.0 7.63e-01 96.9% 86.0%
1878970 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.90 84.0 8.17e-01 100.0% 91.3%
4993731 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.89 79.0 7.62e-01 100.0% 84.8%
4681348 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.89 82.0 8.11e-01 99.0% 93.0%
5034061 148.1.3.400 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN 0.89 80.0 6.20e-01 100.0% 47.9%
4927666 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.88 80.0 7.90e-01 100.0% 92.0%
4466734 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.88 75.0 7.01e-01 100.0% 74.8%
4160317 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.88 75.0 6.98e-01 100.0% 74.8%
5001059 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 70.0 7.60e-01 100.0% 100.0%
4956905 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 70.0 7.58e-01 100.0% 100.0%
4994194 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 65.0 7.33e-01 96.9% 100.0%
4948813 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 68.0 7.37e-01 100.0% 97.5%
2141738 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 79.0 7.84e-01 100.0% 92.9%
4588018 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 74.0 7.48e-01 100.0% 90.5%
5057106 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.87 75.0 7.72e-01 100.0% 97.8%
4989754 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 69.0 7.48e-01 100.0% 100.0%
4952141 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.86 69.0 7.50e-01 100.0% 100.0%
4507907 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 70.0 7.46e-01 100.0% 98.8%
4932763 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.85 67.0 7.31e-01 97.9% 100.0%
4388542 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 72.0 7.09e-01 100.0% 86.0%
5042563 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.85 68.0 7.23e-01 99.0% 96.5%
4946727 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.84 67.0 7.26e-01 97.9% 100.0%
4996564 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.84 67.0 7.09e-01 99.0% 95.3%
5051773 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.84 70.0 7.26e-01 100.0% 94.4%
4954174 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.84 68.0 7.00e-01 100.0% 91.1%
4307412 181.1.1.27 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ATP-cone 0.83 69.0 7.31e-01 100.0% 100.0%
4952067 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.82 54.0 6.41e-01 86.5% 100.0%
5051504 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.81 61.0 6.76e-01 90.6% 100.0%
3784313 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.80 68.0 6.99e-01 100.0% 95.6%
3486229 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.80 69.0 7.15e-01 100.0% 97.8%
2791177 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.80 67.0 6.51e-01 100.0% 81.1%
5004355 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.78 68.0 7.06e-01 97.9% 100.0%
1878968 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.76 64.0 6.35e-01 100.0% 86.0%
5025644 148.1.3.20 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 0.73 55.0 5.96e-01 100.0% 95.0%
4945001 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 59.0 5.83e-01 91.7% 90.0%
5078781 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 48.0 4.96e-01 87.5% 82.2%
3738440 6088.1.1.0 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A 0.65 50.0 5.14e-01 86.5% 86.7%
5044338 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 48.0 4.69e-01 87.5% 72.4%
4209656 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 47.0 4.56e-01 89.6% 72.4%
3704554 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 47.0 4.90e-01 88.5% 87.5%
3742315 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 49.0 4.70e-01 93.8% 73.6%
3199378 6088.1.1.1 alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › 4HB 0.62 47.0 4.84e-01 85.4% 86.7%
3621511 148.1.3.17 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.61 52.0 4.57e-01 100.0% 62.8%
4969623 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 55.0 4.27e-01 100.0% 47.8%
3590231 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.58 43.0 4.17e-01 77.1% 92.4%
3602403 105.1.1.0 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.57 33.0 3.15e-01 82.3% 48.2%
4014858 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 46.0 4.45e-01 87.5% 75.5%
4278702 141.1.1.2 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › SQS_PSY 0.56 39.0 2.68e-01 71.9% 86.8%
3521510 192.7.1.73 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF31020 0.56 47.0 4.51e-01 92.7% 83.6%
3906035 102.1.1.154 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF31020 0.55 48.0 4.58e-01 96.9% 89.6%
3278839 590.1.1.1 alpha bundles › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Citrobacter dihydroxyacetone kinase extra ATP-binding domain › Dak2 0.55 48.0 3.78e-01 96.9% 68.8%
3503552 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 38.0 3.38e-01 70.8% 87.8%
3748471 4953.1.1.33 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PF31020 0.55 48.0 4.47e-01 96.9% 85.8%
3687983 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 45.0 4.00e-01 90.6% 80.7%
4969258 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.53 36.0 3.53e-01 94.8% 60.9%
3644177 611.11.1.0 alpha bundles › N-cbl like › Plasmodium host cell traversal protein SPECT1 › Plasmodium host cell traversal protein SPECT1 0.53 45.0 3.83e-01 97.9% 94.1%
3589796 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.53 37.0 3.62e-01 74.0% 90.9%
3876932 592.3.1.8 alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › PF31020 0.53 46.0 4.50e-01 97.9% 89.5%
5046136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.06e-01 96.9% 68.6%
3399071 206.1.1.63 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PIP49_C+PIP49_N 0.53 43.0 2.95e-01 89.6% 46.2%
5070919 131.1.1.10 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.52 45.0 3.82e-01 100.0% 79.4%
3992628 6026.1.1.22 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › PF29335 0.50 39.0 4.17e-01 85.4% 100.0%
D2 medium residues 194-390
PDB
Domain cluster: representative
D3 medium residues 409-631
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 90.1 1.90e-25 86.6% 35.5%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.88 85.0 6.29e-01 100.0% 47.3%
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.87 84.0 5.80e-01 100.0% 35.6%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.85 65.0 4.89e-01 100.0% 36.4%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.78 76.0 5.27e-01 100.0% 39.7%
3ny7A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.69 33.0 4.45e-01 93.3% 85.6%
1jx7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.62 33.0 4.43e-01 86.1% 97.4%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.61 43.0 4.09e-01 93.3% 61.6%
3jteA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 33.0 4.27e-01 93.3% 92.9%
1fzrA00 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.59 25.0 3.21e-01 99.6% 65.1%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.59 56.0 4.18e-01 100.0% 46.2%
2jk1A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 32.0 3.95e-01 92.4% 84.1%
1k87A03 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.58 53.0 4.50e-01 96.9% 67.6%
1ydhA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 35.0 3.85e-01 91.0% 71.7%
3quaA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 33.0 3.70e-01 87.9% 71.5%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 32.0 3.87e-01 94.6% 83.9%
4dadA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 31.0 4.00e-01 92.8% 94.5%
2qs7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.55 34.0 4.29e-01 98.7% 99.3%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 32.0 3.96e-01 99.6% 93.9%
2qw5A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 50.0 4.44e-01 100.0% 95.4%
2jaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 30.0 3.88e-01 99.1% 96.0%
3e0lA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 49.0 4.41e-01 100.0% 84.5%
2i9uA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 49.0 4.39e-01 100.0% 85.1%
4g1vA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.52 30.0 3.70e-01 91.0% 89.7%
2vrkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 48.0 4.09e-01 100.0% 98.6%
1kl7A03 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 34.0 3.99e-01 76.2% 92.9%
1j79A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 45.0 3.88e-01 92.8% 62.1%
2olsA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.51 47.0 4.24e-01 100.0% 95.8%
1q7zA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.51 47.0 4.28e-01 100.0% 88.3%
5di3B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 3.87e-01 93.3% 81.4%
3pnxA00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.50 35.0 4.07e-01 98.7% 97.5%
3vylA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.50 46.0 4.23e-01 100.0% 91.6%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 42.0 4.36e-01 93.3% 94.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4298539 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 87.0 6.29e-01 100.0% 43.4%
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 86.0 6.31e-01 100.0% 49.6%
4067125 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 86.0 6.34e-01 100.0% 46.5%
3942765 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 86.0 6.27e-01 100.0% 45.3%
3963206 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 86.0 6.23e-01 100.0% 44.5%
4145444 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 86.0 6.28e-01 100.0% 45.7%
2472944 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.88 70.0 5.34e-01 100.0% 40.3%
4015532 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.88 85.0 6.03e-01 100.0% 39.8%
2504767 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.88 85.0 6.24e-01 100.0% 46.7%
3823652 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.88 85.0 6.05e-01 100.0% 40.5%
996122 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 84.0 5.98e-01 100.0% 39.2%
3590466 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 84.0 6.08e-01 100.0% 43.9%
3958480 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 83.0 6.81e-01 99.1% 64.1%
4825675 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.86 49.0 4.70e-01 83.0% 50.4%
4994375 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.84 73.0 5.39e-01 99.6% 39.6%
4990406 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.83 80.0 5.69e-01 100.0% 51.5%
5058546 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.82 79.0 5.54e-01 100.0% 45.9%
4190659 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.82 79.0 5.39e-01 100.0% 40.0%
3972491 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.82 79.0 5.61e-01 100.0% 51.0%
4937370 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.81 78.0 5.47e-01 100.0% 57.4%
4963031 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.81 78.0 5.47e-01 100.0% 52.7%
5030208 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.80 78.0 5.40e-01 100.0% 45.0%
4564490 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.80 77.0 5.54e-01 100.0% 45.9%
4985374 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 77.0 5.43e-01 100.0% 43.8%
4934525 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 76.0 5.48e-01 100.0% 47.2%
5063882 1074.1.1.6 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.77 75.0 6.21e-01 100.0% 69.6%
5040104 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.77 74.0 5.49e-01 100.0% 51.4%
4993733 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.76 73.0 5.27e-01 100.0% 44.5%
3659822 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.62 33.0 4.38e-01 97.8% 92.0%
3969418 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.59 33.0 4.19e-01 92.8% 91.5%
3275621 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.58 54.0 4.25e-01 100.0% 50.4%
5061210 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.57 33.0 4.21e-01 93.3% 94.8%
4976743 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.56 41.0 4.46e-01 91.0% 90.6%
3585189 2003.4.1.1 a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.56 35.0 3.95e-01 82.1% 80.0%
1320111 2002.1.1.67 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.56 52.0 4.48e-01 98.2% 68.8%
4991754 7545.1.1.1 a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.56 34.0 4.32e-01 98.7% 98.5%
4215560 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.56 36.0 4.09e-01 94.2% 84.8%
5073965 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 39.0 3.87e-01 93.3% 69.3%
4982753 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 36.0 4.19e-01 91.9% 95.5%
3631383 2003.1.2.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.54 35.0 4.04e-01 90.1% 90.0%
4999341 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 42.0 4.03e-01 81.2% 72.2%
None 0.53 47.0 3.68e-01 94.2% 76.0%
None 0.53 46.0 3.66e-01 93.7% 75.5%
2131271 2003.1.2.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 0.53 27.0 3.37e-01 93.7% 77.0%
3954346 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.53 41.0 3.71e-01 92.8% 59.0%
1555450 2002.1.1.67 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.53 48.0 4.06e-01 98.2% 76.4%
3279975 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.53 40.0 4.30e-01 92.8% 93.0%
5071291 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 46.0 4.26e-01 92.8% 93.9%
3614490 2007.1.2.27 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase 0.52 34.0 3.96e-01 94.6% 90.0%
5067436 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.52 48.0 4.06e-01 100.0% 88.0%
5040766 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 46.0 4.01e-01 95.1% 77.3%
3359562 2003.1.2.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 27.0 3.08e-01 97.3% 63.4%
4668788 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.51 30.0 3.80e-01 100.0% 95.5%
1308667 2002.1.1.105 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C 0.51 47.0 4.23e-01 100.0% 95.5%
4353758 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 47.0 4.28e-01 100.0% 87.3%
3002691 2007.5.1.5 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF459 0.50 42.0 4.22e-01 93.3% 87.8%
D4 medium residues 673-767_787-810
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nxoA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 26.0 2.89e-01 90.8% 56.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948555 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.52 33.0 3.53e-01 100.0% 72.4%
3178552 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.50 41.0 3.35e-01 86.6% 96.3%