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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00913
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00913
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-57
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gr5A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.66 | 46.0 | 4.34e-01 | 75.5% | 95.6% |
| 7z2bK01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.66 | 54.0 | 3.42e-01 | 96.2% | 35.3% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.65 | 44.0 | 3.84e-01 | 71.7% | 80.2% |
| 1qd1A01 | 3.30.990.10 | Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain | 0.63 | 44.0 | 3.12e-01 | 75.5% | 39.4% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.62 | 43.0 | 3.99e-01 | 75.5% | 100.0% |
| 3cobC00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.62 | 51.0 | 3.22e-01 | 100.0% | 35.9% |
| 3ms6A00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.62 | 39.0 | 3.27e-01 | 94.3% | 37.8% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.61 | 42.0 | 3.73e-01 | 75.5% | 81.2% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 47.0 | 4.05e-01 | 100.0% | 51.1% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 50.0 | 3.77e-01 | 100.0% | 49.3% |
| 1k1gA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.60 | 42.0 | 3.32e-01 | 75.5% | 86.9% |
| 3a0rA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 43.0 | 3.53e-01 | 79.2% | 48.1% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.60 | 41.0 | 3.75e-01 | 75.5% | 84.6% |
| 5zctA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 49.0 | 4.60e-01 | 94.3% | 80.3% |
| 2f9wA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 44.0 | 3.39e-01 | 96.2% | 33.6% |
| 6d6zA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.58 | 49.0 | 3.29e-01 | 100.0% | 42.9% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.58 | 51.0 | 4.25e-01 | 100.0% | 88.4% |
| 3s1sA01 | 3.90.1570.30 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.57 | 42.0 | 3.12e-01 | 84.9% | 92.3% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.57 | 41.0 | 3.50e-01 | 100.0% | 46.6% |
| 4uhvA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.57 | 44.0 | 3.78e-01 | 88.7% | 93.5% |
| 5wjpA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 3.03e-01 | 77.4% | 29.6% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 46.0 | 4.14e-01 | 96.2% | 65.4% |
| 3f56A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.57 | 46.0 | 3.80e-01 | 96.2% | 85.8% |
| 1vw4F01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.57 | 45.0 | 3.86e-01 | 92.5% | 94.6% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.56 | 47.0 | 3.02e-01 | 96.2% | 79.2% |
| 5suhB01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.56 | 46.0 | 3.88e-01 | 98.1% | 88.9% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 44.0 | 3.66e-01 | 98.1% | 48.5% |
| 3c1mA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.55 | 46.0 | 3.34e-01 | 98.1% | 95.1% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.47e-01 | 86.8% | 70.4% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.55 | 43.0 | 3.81e-01 | 96.2% | 60.7% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 43.0 | 3.36e-01 | 96.2% | 81.9% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.54 | 42.0 | 3.49e-01 | 98.1% | 48.0% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.06e-01 | 75.5% | 74.5% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 44.0 | 3.54e-01 | 98.1% | 46.3% |
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 46.0 | 3.59e-01 | 100.0% | 83.2% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.53 | 37.0 | 3.15e-01 | 75.5% | 60.9% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 3.42e-01 | 96.2% | 60.3% |
| 3ethA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.52 | 40.0 | 3.91e-01 | 94.3% | 77.4% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.07e-01 | 77.4% | 82.5% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.02e-01 | 100.0% | 35.2% |
| 1e3mA01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.51 | 42.0 | 3.31e-01 | 96.2% | 49.6% |
| 1xr0B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.38e-01 | 94.3% | 50.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992139 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.73 | 40.0 | 3.07e-01 | 98.1% | 25.2% |
| 3600065 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 56.0 | 3.33e-01 | 100.0% | 24.6% |
| 4620053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 46.0 | 3.25e-01 | 75.5% | 60.0% |
| 4014118 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.64 | 45.0 | 4.07e-01 | 75.5% | 98.7% |
| 3178516 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.64 | 46.0 | 4.02e-01 | 77.4% | 98.8% |
| 3213699 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 46.0 | 3.83e-01 | 79.2% | 78.9% |
| 4185372 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.63 | 44.0 | 2.78e-01 | 73.6% | 26.4% |
| 4023956 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.63 | 52.0 | 4.07e-01 | 100.0% | 94.6% |
| 3781954 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 44.0 | 3.77e-01 | 77.4% | 78.9% |
| 3399450 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 50.0 | 4.45e-01 | 90.6% | 100.0% |
| 3880966 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 44.0 | 3.94e-01 | 75.5% | 97.3% |
| 3493783 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 49.0 | 4.06e-01 | 90.6% | 99.0% |
| 4984286 | 206.1.3.41 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter | 0.61 | 52.0 | 3.47e-01 | 100.0% | 23.8% |
| 4956754 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.60 | 43.0 | 3.58e-01 | 77.4% | 78.9% |
| 4982458 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.60 | 41.0 | 3.81e-01 | 73.6% | 95.7% |
| 3594086 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.59 | 42.0 | 2.69e-01 | 100.0% | 15.4% |
| 3968783 | 304.114.1.1 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNApolII_insertion | 0.59 | 41.0 | 3.74e-01 | 71.7% | 88.6% |
| 5009749 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 43.0 | 3.61e-01 | 77.4% | 75.6% |
| 4178886 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.59 | 46.0 | 3.92e-01 | 100.0% | 50.0% |
| 3786206 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 44.0 | 3.76e-01 | 81.1% | 89.4% |
| 4965914 | 304.54.1.8 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › FLAD1_M | 0.58 | 40.0 | 3.62e-01 | 75.5% | 82.5% |
| 2455618 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 41.0 | 3.24e-01 | 77.4% | 58.6% |
| 210670 | 2.1.1.95 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C | 0.58 | 37.0 | 2.87e-01 | 100.0% | 26.7% |
| 4995788 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.57 | 46.0 | 4.69e-01 | 100.0% | 88.7% |
| 4995220 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 48.0 | 4.02e-01 | 100.0% | 91.0% |
| 3885544 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.57 | 41.0 | 3.98e-01 | 100.0% | 68.3% |
| 3623755 | 223.2.1.16 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 | 0.57 | 42.0 | 3.36e-01 | 98.1% | 38.3% |
| 3986225 | 101.1.9.32 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT | 0.57 | 43.0 | 2.97e-01 | 86.8% | 46.8% |
| 3971543 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.56 | 49.0 | 3.30e-01 | 100.0% | 85.1% |
| 3772566 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.56 | 46.0 | 4.08e-01 | 88.7% | 92.0% |
| 5074130 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.56 | 48.0 | 3.14e-01 | 100.0% | 69.0% |
| 4958500 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.55 | 39.0 | 3.77e-01 | 73.6% | 65.0% |
| 1442273 | 304.11.1.4 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › FAS_AT_central | 0.55 | 45.0 | 3.70e-01 | 90.6% | 70.1% |
| 4133570 | 304.54.1.2 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › CsoS1D_N | 0.55 | 44.0 | 3.59e-01 | 98.1% | 80.0% |
| 4946421 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.54 | 46.0 | 2.64e-01 | 100.0% | 57.5% |
| 3511414 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.53 | 39.0 | 2.38e-01 | 81.1% | 24.8% |
| 3358578 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 43.0 | 3.77e-01 | 94.3% | 92.9% |
| 3788876 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.53 | 45.0 | 2.74e-01 | 100.0% | 96.2% |
| 4582873 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.53 | 44.0 | 4.05e-01 | 92.5% | 97.1% |
| 3839655 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.52 | 44.0 | 2.91e-01 | 100.0% | 36.0% |
| 3502426 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 41.0 | 3.62e-01 | 94.3% | 98.8% |
| 3591080 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 43.0 | 3.72e-01 | 90.6% | 83.7% |
| 5000843 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.16e-01 | 100.0% | 40.9% |
| 3674397 | 2485.1.1.82 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 | 0.51 | 42.0 | 3.53e-01 | 96.2% | 97.9% |
| 3714994 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 43.0 | 2.96e-01 | 98.1% | 34.4% |
| 3396525 | 327.11.2.20 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH | 0.50 | 42.0 | 3.77e-01 | 92.5% | 97.3% |
D2
high
residues 82-192
Domain cluster:
rep: IMGVR_UViG_3300022888_000798-3300022888-Ga0233428_10067647__D217-324
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z19A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.84 | 60.0 | 6.36e-01 | 100.0% | 82.0% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.81 | 59.0 | 6.35e-01 | 98.2% | 88.3% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.74 | 53.0 | 5.90e-01 | 98.2% | 95.3% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.67 | 43.0 | 4.47e-01 | 100.0% | 68.9% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 33.0 | 3.78e-01 | 91.9% | 69.0% |
| 5lnkJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.59 | 35.0 | 3.00e-01 | 72.1% | 37.3% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 39.0 | 4.02e-01 | 100.0% | 72.6% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.57 | 35.0 | 4.15e-01 | 100.0% | 93.1% |
| 1jqkA03 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 39.0 | 3.35e-01 | 100.0% | 45.1% |
| 4kh7B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 31.0 | 3.12e-01 | 94.6% | 50.0% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 27.0 | 3.50e-01 | 95.5% | 82.3% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.54 | 39.0 | 4.33e-01 | 100.0% | 97.7% |
| 1qb2A00 | 1.10.260.30 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain | 0.53 | 40.0 | 4.10e-01 | 94.6% | 84.9% |
| 3kh1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 47.0 | 3.93e-01 | 100.0% | 73.8% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 31.0 | 3.59e-01 | 99.1% | 81.5% |
| 4apyA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 44.0 | 3.10e-01 | 98.2% | 56.5% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.51 | 34.0 | 3.70e-01 | 100.0% | 84.9% |
| 8alzB08 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.51 | 39.0 | 3.73e-01 | 82.0% | 88.5% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.50 | 42.0 | 3.17e-01 | 97.3% | 99.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000879 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.89 | 64.0 | 6.40e-01 | 100.0% | 72.2% |
| 5052501 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.87 | 65.0 | 6.87e-01 | 100.0% | 85.0% |
| 2319286 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.87 | 61.0 | 6.42e-01 | 100.0% | 78.4% |
| 4566550 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.87 | 64.0 | 6.75e-01 | 100.0% | 84.0% |
| 5034381 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.86 | 66.0 | 6.55e-01 | 100.0% | 76.5% |
| 3291009 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.85 | 61.0 | 6.32e-01 | 100.0% | 78.1% |
| 5028331 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.85 | 61.0 | 6.60e-01 | 98.2% | 86.3% |
| 4168571 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.85 | 65.0 | 6.57e-01 | 100.0% | 80.0% |
| 4966681 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.84 | 59.0 | 6.87e-01 | 97.3% | 100.0% |
| 4947439 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.84 | 60.0 | 6.58e-01 | 98.2% | 90.0% |
| 5076856 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.84 | 67.0 | 6.95e-01 | 100.0% | 87.6% |
| 4009383 | 186.1.1.3 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 | 0.83 | 69.0 | 6.84e-01 | 100.0% | 83.5% |
| 5022016 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.82 | 59.0 | 6.36e-01 | 100.0% | 86.3% |
| 4941150 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.82 | 59.0 | 5.74e-01 | 100.0% | 68.3% |
| 299159 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.81 | 59.0 | 6.12e-01 | 98.2% | 80.6% |
| 4198887 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.80 | 60.0 | 6.24e-01 | 99.1% | 81.9% |
| 5081377 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.80 | 58.0 | 6.08e-01 | 98.2% | 83.0% |
| 5081699 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.79 | 57.0 | 6.26e-01 | 97.3% | 91.1% |
| 5010451 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.77 | 62.0 | 6.31e-01 | 98.2% | 85.5% |
| 3588173 | 186.1.1.5 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 | 0.77 | 63.0 | 6.33e-01 | 100.0% | 86.4% |
| 3385552 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.68 | 50.0 | 5.51e-01 | 100.0% | 96.7% |
| 5000678 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 41.0 | 4.29e-01 | 100.0% | 68.0% |
| 5054950 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.65 | 51.0 | 4.94e-01 | 100.0% | 75.2% |
| 3462581 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.60 | 43.0 | 3.79e-01 | 100.0% | 50.3% |
| 4029259 | 3273.1.1.4 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › CLAMP | 0.57 | 45.0 | 4.51e-01 | 100.0% | 82.6% |
| 3176026 | 610.2.1.0 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 | 0.56 | 35.0 | 3.52e-01 | 80.2% | 59.1% |
| 4991127 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 36.0 | 3.69e-01 | 99.1% | 68.2% |
| 3458610 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.55 | 38.0 | 3.61e-01 | 100.0% | 60.0% |
| 4472484 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.52 | 37.0 | 3.59e-01 | 74.8% | 86.4% |
| 3243147 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 38.0 | 3.74e-01 | 100.0% | 71.2% |
| 4308432 | 1037.1.1.1 ↗ | alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT | 0.50 | 44.0 | 3.45e-01 | 98.2% | 49.6% |
| 3659227 | 101.35.1.28 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26576 | 0.50 | 37.0 | 3.81e-01 | 77.5% | 100.0% |
| 4452686 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.50 | 36.0 | 3.28e-01 | 74.8% | 75.3% |
D3
high
residues 229-459
Domain cluster:
rep: MK448963.1__QBX29522.1__Javan498_0048__00001__D46-231
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 38.1 | 1.90e-09 | 79.7% | 76.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.84 | 47.0 | 5.53e-01 | 78.8% | 75.9% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.80 | 57.0 | 6.40e-01 | 93.9% | 92.2% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.77 | 49.0 | 5.88e-01 | 93.1% | 93.1% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.76 | 51.0 | 5.91e-01 | 78.8% | 90.8% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.71 | 54.0 | 5.60e-01 | 78.4% | 82.8% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.68 | 52.0 | 5.51e-01 | 79.2% | 87.7% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 20.0 | 2.61e-01 | 71.9% | 58.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946063 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 62.0 | 6.73e-01 | 93.9% | 93.3% |
| 5041911 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.79 | 52.0 | 6.12e-01 | 93.9% | 92.1% |
| 5002702 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 51.0 | 5.66e-01 | 79.2% | 80.0% |
| 5000880 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 49.0 | 5.56e-01 | 78.8% | 81.1% |
| 5012504 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.75 | 54.0 | 6.08e-01 | 93.5% | 92.8% |
| 4475168 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 51.0 | 5.57e-01 | 78.8% | 81.0% |
| 5016957 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 52.0 | 6.02e-01 | 78.8% | 93.7% |
| 4994277 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 53.0 | 5.97e-01 | 91.3% | 91.7% |
| 4181053 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 51.0 | 5.48e-01 | 78.8% | 80.5% |
| 5073434 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.74 | 60.0 | 6.39e-01 | 93.1% | 96.0% |
| 4997941 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 59.0 | 6.21e-01 | 92.2% | 92.9% |
| 4954527 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.72 | 60.0 | 6.18e-01 | 94.4% | 90.9% |
| 5076857 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 49.0 | 5.59e-01 | 91.3% | 94.3% |
| 5078379 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.69 | 57.0 | 6.07e-01 | 90.9% | 97.5% |
| 4964439 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.67 | 52.0 | 5.44e-01 | 79.2% | 85.1% |
| 4021119 | 101.1.8.7 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II | 0.64 | 59.0 | 5.20e-01 | 98.7% | 89.6% |
| 4928148 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.64 | 43.0 | 5.06e-01 | 91.3% | 94.0% |
| 3723459 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 24.0 | 3.57e-01 | 90.9% | 93.3% |