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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00918

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00918

Identity

Kingdom:
phage

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-102
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 63.0 5.53e-01 100.0% 78.9%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 62.0 5.67e-01 100.0% 81.6%
2cw9A00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 59.0 4.58e-01 100.0% 69.2%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 56.0 5.30e-01 100.0% 76.8%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 57.0 4.62e-01 100.0% 74.7%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 57.0 4.67e-01 100.0% 85.1%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 47.0 4.03e-01 77.9% 94.7%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 56.0 4.81e-01 100.0% 85.8%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 55.0 4.85e-01 100.0% 90.1%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 56.0 4.79e-01 100.0% 84.5%
2fxtA00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 55.0 4.22e-01 100.0% 65.1%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.53e-01 100.0% 83.8%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 49.0 4.35e-01 83.1% 72.5%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.47e-01 100.0% 77.0%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 53.0 4.26e-01 100.0% 82.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 53.0 4.53e-01 100.0% 87.5%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 51.0 4.22e-01 100.0% 95.4%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 4.67e-01 100.0% 79.3%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 51.0 4.34e-01 100.0% 83.5%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.56e-01 100.0% 89.4%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.60 51.0 4.87e-01 100.0% 81.3%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 39.0 3.52e-01 97.4% 47.7%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.33e-01 100.0% 79.0%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.21e-01 100.0% 72.3%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.31e-01 100.0% 82.0%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 51.0 4.46e-01 100.0% 93.3%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.23e-01 100.0% 80.6%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.35e-01 100.0% 90.6%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 3.95e-01 100.0% 74.7%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.07e-01 100.0% 84.4%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.14e-01 100.0% 94.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.09e-01 98.7% 84.1%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 4.05e-01 100.0% 83.3%
3b7kB01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 41.0 3.41e-01 80.5% 77.1%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 4.01e-01 100.0% 88.5%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 42.0 3.19e-01 84.4% 94.9%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.72e-01 100.0% 58.0%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 4.21e-01 100.0% 81.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.87e-01 88.3% 80.9%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.01e-01 100.0% 82.9%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 46.0 4.10e-01 100.0% 87.3%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.53 38.0 2.96e-01 94.8% 31.4%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.90e-01 100.0% 34.3%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 36.0 3.15e-01 72.7% 99.2%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.47e-01 80.5% 96.6%
6hswA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 35.0 2.25e-01 71.4% 23.5%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.52e-01 100.0% 59.4%
4a8jF00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.96e-01 90.9% 98.5%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.56e-01 100.0% 60.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.79e-01 100.0% 93.1%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 37.0 2.92e-01 79.2% 49.4%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.51 43.0 3.90e-01 98.7% 96.3%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.72e-01 100.0% 20.8%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3435224 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.75 56.0 6.01e-01 87.0% 95.4%
3440015 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 57.0 5.38e-01 100.0% 76.8%
3447011 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.68 59.0 4.69e-01 100.0% 48.5%
3278323 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.67 58.0 4.96e-01 100.0% 83.1%
3958251 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 57.0 4.64e-01 100.0% 73.4%
3462235 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.66 56.0 5.62e-01 100.0% 95.0%
2765234 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.65 58.0 5.42e-01 100.0% 83.5%
3970236 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 57.0 4.71e-01 100.0% 82.0%
170212 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.64 55.0 4.85e-01 100.0% 90.1%
137634 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.64 56.0 4.78e-01 100.0% 84.5%
1318716 3784.1.1.3 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Clospo_01618-like 0.64 46.0 3.90e-01 76.6% 92.4%
3588473 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.64 56.0 5.07e-01 100.0% 80.6%
4152363 243.1.1.115 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.63 55.0 4.78e-01 100.0% 87.0%
3728062 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 57.0 4.66e-01 100.0% 81.4%
6408 243.1.1.26 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.63 54.0 4.46e-01 100.0% 76.5%
3587514 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.62 55.0 4.65e-01 100.0% 83.1%
4950139 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.62 56.0 4.75e-01 100.0% 90.4%
5059048 243.1.1.13 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.62 53.0 4.65e-01 100.0% 91.9%
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 49.0 4.84e-01 100.0% 82.5%
3958465 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 54.0 4.39e-01 100.0% 77.3%
4608992 243.1.1.1 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.61 52.0 4.25e-01 100.0% 85.4%
3291726 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 52.0 4.27e-01 100.0% 74.7%
5022156 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.61 53.0 4.45e-01 100.0% 83.3%
3430924 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 54.0 4.28e-01 100.0% 71.9%
4958928 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 50.0 4.52e-01 97.4% 100.0%
3588750 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.60 47.0 4.81e-01 100.0% 88.0%
1688901 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.60 52.0 4.51e-01 100.0% 83.6%
3970009 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 51.0 4.11e-01 100.0% 79.3%
4283272 243.1.1.1 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.60 51.0 4.08e-01 100.0% 77.6%
4960252 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 51.0 4.51e-01 100.0% 91.6%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.60 42.0 4.40e-01 98.7% 82.9%
3056323 243.1.1.1 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.59 50.0 4.12e-01 100.0% 84.2%
3284639 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 51.0 4.20e-01 100.0% 74.7%
6389 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.59 50.0 4.42e-01 100.0% 87.7%
3519929 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 51.0 4.38e-01 100.0% 83.8%
5003871 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.58 49.0 4.17e-01 100.0% 85.0%
3465947 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.58 47.0 3.36e-01 97.4% 28.6%
3288890 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 50.0 4.30e-01 100.0% 85.4%
4938402 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.58 43.0 4.09e-01 88.3% 66.3%
3967620 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 50.0 4.24e-01 100.0% 80.0%
3695702 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.57 49.0 3.21e-01 100.0% 24.9%
5002369 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 48.0 4.33e-01 100.0% 90.4%
4965879 881.1.1.44 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.57 45.0 3.51e-01 98.7% 37.3%
3366063 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 45.0 3.53e-01 100.0% 38.9%
3959349 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 49.0 4.12e-01 100.0% 82.8%
3935356 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 42.0 3.72e-01 98.7% 53.3%
3696055 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 48.0 4.08e-01 100.0% 78.5%
3270456 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 45.0 3.45e-01 100.0% 35.9%
3287916 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 48.0 4.12e-01 100.0% 85.4%
3437556 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 45.0 3.45e-01 100.0% 36.8%
3609111 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.76e-01 100.0% 48.7%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.55 39.0 4.10e-01 98.7% 84.3%
134348 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 47.0 4.03e-01 100.0% 82.7%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.55 44.0 4.18e-01 98.7% 74.4%
4371290 9.3.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.55 47.0 4.11e-01 100.0% 79.8%
3536727 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.55 43.0 3.42e-01 100.0% 41.2%
3715923 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.55 47.0 3.01e-01 100.0% 26.2%
4204257 243.1.1.7 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.54 46.0 3.96e-01 100.0% 80.5%
6390 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.54 45.0 4.04e-01 100.0% 96.6%
3584922 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.54 43.0 3.07e-01 100.0% 27.6%
3969662 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.54 45.0 2.86e-01 92.2% 58.5%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.54 40.0 4.08e-01 96.1% 85.3%
2958186 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.99e-01 72.7% 100.0%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 33.0 3.88e-01 84.4% 100.0%
3811535 331.3.1.28 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.52 44.0 3.78e-01 98.7% 59.2%
4381736 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 40.0 3.99e-01 85.7% 85.0%
3961157 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 44.0 3.85e-01 97.4% 74.2%
3701306 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.51 44.0 3.29e-01 98.7% 51.4%
3365246 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 40.0 3.18e-01 100.0% 40.0%
3205559 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.51 42.0 3.44e-01 98.7% 49.0%
3173646 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 37.0 3.01e-01 80.5% 73.9%
3593049 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 44.0 3.28e-01 100.0% 51.9%