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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00938
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00938
Identity
- Kingdom:
- phage
Quality
60.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-85
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7k0yA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 53.0 | 3.33e-01 | 90.6% | 21.7% |
| 3pvlA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.58 | 50.0 | 3.82e-01 | 98.8% | 66.3% |
| 2kz5A00 | 1.10.880.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain | 0.52 | 27.0 | 2.64e-01 | 87.1% | 47.3% |
| 3d3yA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 45.0 | 3.34e-01 | 100.0% | 86.4% |
| 1nstA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 3.08e-01 | 100.0% | 90.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4427984 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.60 | 52.0 | 4.10e-01 | 100.0% | 88.9% |
| 3267443 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.55 | 49.0 | 3.82e-01 | 100.0% | 65.3% |
| 3630268 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 40.0 | 3.72e-01 | 75.3% | 66.7% |
| 3727885 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.52 | 39.0 | 3.93e-01 | 82.4% | 94.4% |
| 3803694 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.51 | 39.0 | 3.40e-01 | 85.9% | 93.1% |
D2
medium
residues 86-202
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5mdtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 52.0 | 4.84e-01 | 94.0% | 92.8% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 47.0 | 4.71e-01 | 85.5% | 99.1% |
| 1vdyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 49.0 | 4.70e-01 | 94.9% | 94.3% |
| 1fbwA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 47.0 | 3.24e-01 | 88.9% | 48.9% |
| 4ga6A02 | 1.20.970.50 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.54 | 46.0 | 4.25e-01 | 93.2% | 72.4% |
| 2r6tB01 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.53 | 38.0 | 3.43e-01 | 74.4% | 79.5% |
| 4xvcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.26e-01 | 94.0% | 82.5% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 36.0 | 3.44e-01 | 86.3% | 63.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3917586 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 4.69e-01 | 88.9% | 75.7% |
| 3338787 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.58 | 50.0 | 4.58e-01 | 94.9% | 99.4% |
| 4970738 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.57 | 33.0 | 3.33e-01 | 92.3% | 54.2% |
| 351198 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.55 | 43.0 | 4.07e-01 | 83.8% | 85.3% |
| 3322527 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.55 | 41.0 | 4.42e-01 | 79.5% | 93.0% |
| 3845036 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.50 | 36.0 | 2.71e-01 | 74.4% | 70.7% |
D3
medium
residues 237-347
D4
medium
residues 348-453
D5
medium
residues 454-542