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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00942

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00942

Identity

Kingdom:
phage

Quality

75.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-101
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kxeA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.75 48.0 4.14e-01 98.3% 41.5%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 47.0 3.35e-01 71.7% 75.0%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.56e-01 100.0% 60.7%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.81e-01 100.0% 75.8%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.01e-01 100.0% 83.6%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.59e-01 100.0% 65.4%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.06e-01 100.0% 86.7%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.99e-01 100.0% 81.5%
3fxtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 46.0 4.05e-01 100.0% 52.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.35e-01 100.0% 55.9%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.63 49.0 4.28e-01 100.0% 55.9%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.12e-01 100.0% 49.1%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.47e-01 100.0% 61.1%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 50.0 4.98e-01 100.0% 85.9%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.53e-01 100.0% 70.8%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 52.0 3.72e-01 96.7% 50.3%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 46.0 3.47e-01 100.0% 34.0%
4fqdB02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.61 40.0 2.79e-01 100.0% 19.0%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.31e-01 100.0% 58.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.19e-01 100.0% 54.5%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.67e-01 100.0% 77.5%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.50e-01 100.0% 64.5%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.26e-01 100.0% 62.4%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.43e-01 98.3% 66.7%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.34e-01 100.0% 62.2%
1z6gA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.59 44.0 4.43e-01 91.7% 81.7%
1kgdA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.59 43.0 4.30e-01 95.0% 80.0%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.74e-01 100.0% 82.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.37e-01 100.0% 63.0%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.58 43.0 4.36e-01 91.7% 81.7%
2wk1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 2.98e-01 100.0% 21.1%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.31e-01 100.0% 67.1%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 4.08e-01 100.0% 61.3%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 44.0 3.36e-01 93.3% 80.9%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.54 46.0 4.41e-01 100.0% 82.9%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 43.0 4.23e-01 95.0% 98.5%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 43.0 3.12e-01 93.3% 38.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.65e-01 95.0% 82.7%
1jo0A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.53 38.0 3.36e-01 100.0% 49.5%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.52 38.0 3.64e-01 100.0% 64.9%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 40.0 3.52e-01 98.3% 54.3%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.09e-01 100.0% 80.2%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 41.0 3.39e-01 95.0% 91.1%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 39.0 2.97e-01 93.3% 96.7%
3dnpA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.50 42.0 3.51e-01 98.3% 99.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 61.0 5.13e-01 100.0% 55.8%
5027907 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.70 51.0 4.13e-01 100.0% 40.9%
3397502 4012.4.1.0 a+b two layers › SSHS domain › DPAGT1 insertion domain › DPAGT1 insertion domain 0.69 44.0 5.15e-01 90.0% 100.0%
4997333 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.68 53.0 4.96e-01 100.0% 68.0%
5053578 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.19e-01 100.0% 72.0%
5073944 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 4.95e-01 100.0% 72.9%
5067582 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.66 47.0 3.78e-01 100.0% 38.1%
4969028 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.66 45.0 3.23e-01 100.0% 25.3%
5077868 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 4.90e-01 100.0% 75.4%
4958658 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 51.0 4.76e-01 100.0% 68.0%
5010437 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.66 50.0 5.09e-01 98.3% 85.0%
5077254 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.66 57.0 3.39e-01 100.0% 18.8%
3287283 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.30e-01 100.0% 48.2%
4251909 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 56.0 4.97e-01 100.0% 67.1%
2429383 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.65 54.0 3.41e-01 95.0% 98.2%
4958659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 51.0 4.44e-01 100.0% 57.8%
4971131 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 54.0 3.23e-01 100.0% 18.2%
4559973 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.63 49.0 4.16e-01 100.0% 51.0%
3580296 109.4.1.2728 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, TPR_IMB1 0.63 39.0 2.33e-01 96.7% 8.1%
4938042 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.63 48.0 4.09e-01 85.0% 95.2%
4946410 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.46e-01 100.0% 63.7%
3547225 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 51.0 3.10e-01 93.3% 91.2%
3762363 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.63 51.0 3.01e-01 93.3% 78.4%
3849724 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.63 51.0 3.08e-01 93.3% 91.3%
4982742 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 5.09e-01 100.0% 86.2%
4928166 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 5.00e-01 100.0% 96.4%
5011344 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.94e-01 98.3% 86.2%
4933162 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.91e-01 100.0% 87.7%
4963823 304.126.1.9 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › VNG_1110C 0.59 36.0 3.79e-01 93.3% 67.3%
3934946 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 43.0 3.01e-01 83.3% 94.2%
4051669 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 40.0 3.48e-01 73.3% 85.3%
5041631 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.53e-01 100.0% 92.7%
3906475 5.1.4.275 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N 0.57 48.0 3.12e-01 98.3% 83.5%
3843096 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.57 48.0 3.11e-01 98.3% 80.6%
3262891 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.57 42.0 4.14e-01 100.0% 75.4%
4310372 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.57 50.0 3.54e-01 100.0% 37.3%
3279309 3110.1.1.12 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › YkcB_C 0.55 49.0 3.58e-01 100.0% 40.0%
4930880 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 40.0 3.89e-01 100.0% 70.0%
3193192 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.54 45.0 3.17e-01 95.0% 30.0%
3596458 810.1.1.3 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 0.54 38.0 2.81e-01 75.0% 76.0%
4316703 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.54 38.0 3.64e-01 93.3% 64.3%
3925496 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.88e-01 95.0% 76.7%
1271913 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.53 43.0 3.16e-01 93.3% 40.7%
5012123 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.53 38.0 3.43e-01 100.0% 54.1%
4983256 328.9.1.1 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.53 41.0 3.84e-01 100.0% 67.1%
5003127 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.53 45.0 4.03e-01 100.0% 67.8%
3938142 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.53 38.0 2.68e-01 78.3% 76.4%
4455320 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 42.0 2.61e-01 93.3% 18.8%
5060154 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 37.0 3.57e-01 93.3% 67.1%
5020647 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.51 43.0 3.46e-01 100.0% 52.3%
4971926 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.51 38.0 3.48e-01 100.0% 58.8%
4170959 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 37.0 3.74e-01 100.0% 83.3%