Back to structures

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00969

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00969

Identity

Kingdom:
phage

Quality

72.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-105
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fanA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.83 56.0 6.54e-01 92.2% 97.3%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 55.0 6.31e-01 95.1% 97.4%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 60.0 5.96e-01 91.3% 86.7%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 63.0 6.20e-01 95.1% 100.0%
6mv4H02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 61.0 6.02e-01 91.3% 88.0%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 61.0 5.92e-01 95.1% 83.2%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 41.0 4.59e-01 86.4% 93.2%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 51.0 4.70e-01 90.3% 91.9%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 49.0 4.22e-01 90.3% 83.3%
7zxkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 4.07e-01 74.8% 73.1%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 4.02e-01 94.2% 94.6%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 4.26e-01 89.3% 87.4%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.91e-01 90.3% 70.0%
7u7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.04e-01 74.8% 74.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 4.17e-01 90.3% 92.6%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.57 26.0 3.72e-01 78.6% 93.8%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.94e-01 76.7% 97.5%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 4.15e-01 89.3% 78.1%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 4.40e-01 90.3% 89.5%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 4.22e-01 89.3% 83.1%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 4.03e-01 90.3% 80.5%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 4.27e-01 92.2% 89.6%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 45.0 4.11e-01 94.2% 83.2%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 44.0 4.19e-01 89.3% 88.5%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 4.18e-01 92.2% 87.3%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.52 41.0 3.86e-01 86.4% 95.2%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.50 41.0 3.79e-01 89.3% 95.5%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.61e-01 73.8% 90.2%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.50 37.0 3.60e-01 77.7% 77.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408736 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 67.0 4.86e-01 98.1% 43.6%
3957702 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 59.0 5.37e-01 99.0% 67.4%
3401816 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 65.0 4.82e-01 100.0% 45.7%
3428386 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.68 61.0 4.54e-01 100.0% 40.0%
3428387 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.68 60.0 4.95e-01 99.0% 55.0%
4939745 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.67 60.0 4.67e-01 100.0% 45.5%
3420315 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.67 59.0 4.70e-01 99.0% 49.5%
4429352 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 43.0 4.54e-01 81.6% 77.8%
3761841 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 42.0 4.01e-01 79.6% 60.0%
4157289 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.61 51.0 4.29e-01 91.3% 81.1%
3388199 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.61 49.0 4.23e-01 89.3% 72.4%
3164508 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.60 50.0 4.24e-01 90.3% 83.5%
4999024 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 49.0 4.01e-01 91.3% 88.1%
4944685 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.58 48.0 4.28e-01 90.3% 90.0%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.37e-01 82.5% 92.2%
4975825 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 48.0 4.28e-01 89.3% 88.2%
5004573 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 47.0 4.24e-01 90.3% 81.9%
4977763 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 47.0 4.16e-01 90.3% 87.1%
3960580 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 47.0 4.17e-01 89.3% 82.7%
5048653 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 47.0 4.17e-01 91.3% 85.8%
4997723 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 47.0 4.18e-01 91.3% 85.8%
5016426 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 46.0 4.05e-01 89.3% 86.2%
3977990 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 48.0 4.20e-01 94.2% 88.1%
3248219 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.84e-01 74.8% 65.5%
4958989 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 47.0 4.17e-01 91.3% 88.4%
4947401 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 46.0 4.06e-01 89.3% 85.8%
4926888 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 47.0 4.38e-01 91.3% 89.2%
3279818 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 47.0 4.27e-01 93.2% 70.8%
4400460 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 47.0 4.27e-01 92.2% 83.6%
3259124 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 4.08e-01 75.7% 77.1%
4658432 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 47.0 4.32e-01 93.2% 83.0%
4981706 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.56 47.0 4.14e-01 93.2% 87.0%
4960378 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.55 45.0 4.10e-01 91.3% 85.5%
4988831 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 25.0 3.26e-01 81.6% 78.2%
5019351 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 33.0 3.54e-01 72.8% 70.0%
3210962 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 4.17e-01 84.5% 86.3%
3759214 10.32.1.1 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_B 0.51 42.0 3.56e-01 92.2% 89.7%
4317167 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.50 29.0 3.22e-01 90.3% 71.2%
3217257 11.1.1.955 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.50 38.0 3.84e-01 80.6% 97.0%
D2 medium residues 106-202
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.83 68.0 5.18e-01 100.0% 41.1%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 71.0 6.60e-01 100.0% 75.7%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 68.0 7.21e-01 100.0% 98.8%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 61.0 6.42e-01 100.0% 87.2%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 73.0 7.20e-01 97.9% 100.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 75.0 5.75e-01 100.0% 48.8%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.79 49.0 5.54e-01 86.6% 81.3%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 66.0 6.62e-01 94.8% 86.9%
1m9uA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 71.0 6.31e-01 96.9% 90.2%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 73.0 7.12e-01 100.0% 91.5%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 66.0 5.84e-01 95.9% 64.9%
1arbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 70.0 6.45e-01 96.9% 80.3%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 70.0 6.78e-01 100.0% 94.4%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 69.0 6.45e-01 96.9% 88.9%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 70.0 6.86e-01 100.0% 95.2%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 65.0 6.34e-01 97.9% 83.8%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 68.0 6.53e-01 94.8% 89.7%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 67.0 6.57e-01 100.0% 88.6%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.74 69.0 4.72e-01 100.0% 43.2%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 67.0 6.56e-01 100.0% 90.4%
3u28C00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.72 48.0 4.99e-01 100.0% 72.8%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 66.0 4.75e-01 100.0% 50.6%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 63.0 6.19e-01 100.0% 90.2%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 57.0 4.91e-01 89.7% 78.7%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 61.0 5.84e-01 97.9% 94.7%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 58.0 4.81e-01 90.7% 76.5%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.68 60.0 5.81e-01 95.9% 85.3%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 59.0 5.83e-01 93.8% 89.1%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 4.89e-01 90.7% 80.3%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 59.0 4.76e-01 96.9% 91.6%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 4.88e-01 90.7% 81.2%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 57.0 4.64e-01 91.8% 75.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 57.0 5.26e-01 93.8% 87.1%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 5.15e-01 96.9% 95.7%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 5.12e-01 97.9% 97.9%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.65 41.0 3.94e-01 74.2% 54.5%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.90e-01 92.8% 94.1%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 4.54e-01 91.8% 82.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 44.0 4.81e-01 70.1% 100.0%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 56.0 4.45e-01 97.9% 64.0%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 55.0 5.07e-01 96.9% 96.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 54.0 5.01e-01 93.8% 83.6%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 52.0 4.71e-01 89.7% 72.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.54e-01 93.8% 87.5%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 44.0 4.54e-01 75.3% 83.9%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.62 36.0 4.29e-01 89.7% 88.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.22e-01 70.1% 81.8%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 38.0 4.31e-01 95.9% 86.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 38.0 3.91e-01 95.9% 68.5%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.59 43.0 3.88e-01 77.3% 91.9%
2oseA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.57 39.0 3.18e-01 71.1% 96.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.31e-01 71.1% 98.6%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.73e-01 76.3% 78.5%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 39.0 3.93e-01 77.3% 84.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.77e-01 75.3% 76.2%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 2.87e-01 89.7% 59.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 33.0 3.47e-01 78.4% 68.5%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 35.0 3.32e-01 71.1% 94.1%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 35.0 2.84e-01 71.1% 51.1%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.50 34.0 3.08e-01 71.1% 75.5%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.83 73.0 5.47e-01 100.0% 42.4%
4387060 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 73.0 5.43e-01 100.0% 41.4%
3969739 1.1.17.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › PF30586 0.82 78.0 5.63e-01 100.0% 43.8%
3449628 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.82 71.0 6.63e-01 100.0% 76.5%
3210702 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.82 77.0 5.36e-01 100.0% 37.9%
3198319 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 77.0 5.12e-01 100.0% 31.6%
5063379 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.81 72.0 5.68e-01 100.0% 50.0%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 68.0 5.18e-01 100.0% 42.5%
4247805 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.81 72.0 5.37e-01 100.0% 42.7%
4485576 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.81 76.0 5.24e-01 100.0% 34.8%
3198252 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.80 76.0 6.12e-01 100.0% 57.1%
3789008 1.1.5.85 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S64 0.80 75.0 5.09e-01 100.0% 34.0%
4166426 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 75.0 5.31e-01 100.0% 37.0%
3948218 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.79 75.0 5.41e-01 100.0% 40.8%
4441614 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 75.0 5.34e-01 100.0% 38.8%
5010595 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 54.0 5.74e-01 76.3% 80.0%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 72.0 5.08e-01 100.0% 34.5%
398505 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 74.0 5.43e-01 100.0% 44.7%
4991129 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 48.0 5.13e-01 85.6% 71.4%
3493511 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 71.0 5.21e-01 100.0% 40.0%
3650249 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 73.0 5.29e-01 100.0% 40.0%
4647114 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 73.0 5.31e-01 100.0% 40.8%
5035938 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 73.0 5.39e-01 100.0% 44.4%
5074238 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 48.0 5.42e-01 84.5% 81.3%
3184103 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 72.0 5.16e-01 100.0% 43.4%
4620869 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.77 71.0 4.76e-01 100.0% 39.5%
3106034 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 69.0 4.98e-01 100.0% 38.1%
4969578 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 48.0 5.43e-01 86.6% 82.4%
3194806 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 72.0 4.99e-01 100.0% 42.1%
5059785 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 52.0 5.70e-01 78.4% 83.7%
3647453 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 72.0 5.13e-01 100.0% 39.2%
4625374 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 72.0 5.32e-01 100.0% 42.6%
140973 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.77 70.0 5.27e-01 100.0% 44.9%
4930890 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 45.0 5.06e-01 70.1% 76.0%
5077063 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.76 48.0 5.40e-01 84.5% 82.7%
4933363 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.76 47.0 5.35e-01 83.5% 82.4%
5041607 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 48.0 5.41e-01 86.6% 83.8%
3236373 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.75 70.0 4.95e-01 100.0% 37.0%
5035997 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 46.0 5.35e-01 85.6% 85.7%
4945432 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 48.0 5.15e-01 77.3% 75.3%
3674829 1.1.13.61 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 0.74 51.0 5.98e-01 88.7% 98.6%
3710481 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.74 49.0 5.16e-01 84.5% 73.3%
4883897 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.72 68.0 4.93e-01 100.0% 40.6%
4960051 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 67.0 5.43e-01 100.0% 55.7%
4987864 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.72 45.0 4.99e-01 87.6% 80.0%
4059005 1.1.17.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S7 0.72 66.0 4.78e-01 100.0% 55.0%
2512790 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.72 68.0 4.91e-01 100.0% 41.1%
5002426 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.71 51.0 5.39e-01 78.4% 83.5%
138887 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.71 63.0 5.92e-01 97.9% 92.3%
22087 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.70 66.0 4.79e-01 100.0% 40.0%
5051893 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.70 47.0 5.12e-01 76.3% 83.7%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 40.0 4.98e-01 92.8% 93.3%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 42.0 5.08e-01 96.9% 92.2%
4015954 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 62.0 4.66e-01 100.0% 47.2%
3256764 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 47.0 4.21e-01 71.1% 92.3%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 47.0 4.26e-01 71.1% 83.2%
3483841 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.68 49.0 4.78e-01 99.0% 69.9%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 46.0 5.23e-01 71.1% 97.3%
4499041 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.66 60.0 4.69e-01 100.0% 58.0%
2879003 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 45.0 4.36e-01 70.1% 100.0%
4366483 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 45.0 4.82e-01 71.1% 92.9%
4400928 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.64 46.0 4.30e-01 77.3% 64.8%
3267872 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 47.0 4.26e-01 78.4% 62.3%
3717986 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 41.0 3.87e-01 95.9% 56.5%
3646890 4.25.1.1 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.61 44.0 4.71e-01 95.9% 85.9%
4516083 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 45.0 4.31e-01 78.4% 78.2%
4606765 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.60 45.0 4.35e-01 79.4% 71.8%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 41.0 4.45e-01 71.1% 87.5%
3675120 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 39.0 4.18e-01 94.8% 81.2%
3846130 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.57 39.0 3.07e-01 72.2% 33.7%
3608011 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 3.95e-01 95.9% 64.2%
3576534 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.55 38.0 3.10e-01 71.1% 97.8%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 37.0 3.88e-01 70.1% 78.9%
4943928 1.1.7.140 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 0.54 42.0 3.79e-01 82.5% 87.7%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.20e-01 72.2% 100.0%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 36.0 3.86e-01 71.1% 95.3%
4969694 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.53 41.0 3.44e-01 97.9% 47.6%
3505947 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.53 37.0 3.47e-01 72.2% 89.2%
3496126 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.53 38.0 4.02e-01 99.0% 83.0%
4422325 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.75e-01 71.1% 97.8%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.89e-01 71.1% 98.8%
3550699 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.52 36.0 3.64e-01 71.1% 74.7%
5009312 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.78e-01 80.4% 96.4%
3721700 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.45e-01 86.6% 84.4%
5029334 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.50 37.0 3.10e-01 77.3% 97.6%
D3 medium residues 203-265
PDB