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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00970

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00970

Identity

Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 35-114
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 36.0 4.65e-01 88.7% 88.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 4.51e-01 93.8% 78.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 4.08e-01 82.5% 72.3%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.61 46.0 4.27e-01 97.5% 64.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 37.0 4.08e-01 82.5% 77.8%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 4.25e-01 100.0% 80.0%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.59 43.0 3.40e-01 77.5% 79.3%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 39.0 4.43e-01 97.5% 96.4%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 39.0 4.34e-01 93.8% 88.7%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 45.0 4.17e-01 90.0% 63.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 36.0 4.05e-01 95.0% 82.0%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 4.50e-01 82.5% 94.8%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 37.0 4.02e-01 82.5% 77.6%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 4.05e-01 97.5% 75.7%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 49.0 3.48e-01 97.5% 41.2%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 4.38e-01 98.8% 80.7%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 43.0 3.87e-01 82.5% 80.2%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 41.0 3.78e-01 78.8% 84.9%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.98e-01 92.5% 92.4%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 46.0 3.37e-01 100.0% 43.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.69e-01 92.5% 80.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.56e-01 82.5% 75.8%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 45.0 4.12e-01 96.2% 89.9%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 46.0 3.01e-01 100.0% 87.7%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.86e-01 96.2% 67.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 35.0 3.88e-01 88.7% 95.1%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 41.0 2.73e-01 91.3% 63.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 34.0 3.20e-01 81.2% 58.5%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 38.0 3.23e-01 83.7% 60.8%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 36.0 3.46e-01 76.2% 98.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930329 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 37.0 4.48e-01 75.0% 90.0%
1075289 2.4.1.5 ↗ beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.63 38.0 4.14e-01 81.2% 73.4%
3598064 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.62 50.0 4.31e-01 87.5% 90.4%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.30e-01 95.0% 87.3%
3947541 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 36.0 4.39e-01 76.2% 98.0%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.58 47.0 4.26e-01 100.0% 63.5%
4562403 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.57 43.0 4.49e-01 100.0% 88.0%
4064214 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 37.0 4.03e-01 83.7% 83.1%
3173704 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 49.0 4.35e-01 96.2% 93.0%
4311788 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.56 40.0 3.52e-01 82.5% 51.3%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.69e-01 98.8% 54.2%
3629240 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.55 43.0 3.87e-01 83.7% 76.4%
3586315 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 43.0 3.61e-01 83.7% 62.2%
1265607 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.55 36.0 3.04e-01 82.5% 37.9%
3854099 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 47.0 3.77e-01 93.8% 56.1%
5077487 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 42.0 3.44e-01 82.5% 46.4%
4931364 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 3.94e-01 88.7% 71.1%
4159763 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 48.0 4.05e-01 98.8% 96.3%
3951937 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.54 36.0 3.49e-01 72.5% 60.7%
3643793 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 41.0 2.72e-01 86.3% 99.5%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.91e-01 97.5% 69.5%
3960733 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.53 35.0 3.48e-01 72.5% 63.5%
4994226 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 40.0 3.54e-01 83.7% 92.8%
3163776 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 39.0 3.35e-01 82.5% 48.5%
3839740 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 40.0 3.40e-01 83.7% 91.4%
3476018 220.1.1.155 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26658 0.52 39.0 3.42e-01 98.8% 52.0%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.52 43.0 3.92e-01 91.3% 74.5%
4085451 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 40.0 3.69e-01 85.0% 93.6%
4632710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 29.0 3.52e-01 87.5% 93.3%
3879303 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.52 37.0 3.76e-01 76.2% 85.0%
3893735 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 38.0 3.43e-01 80.0% 74.8%
3739683 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.51 46.0 4.12e-01 98.8% 80.9%
3278081 2.4.1.15 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2, CysA_C_terminal 0.51 39.0 3.48e-01 83.7% 85.8%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.62e-01 100.0% 63.8%
3624750 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 39.0 3.59e-01 85.0% 90.9%
5004174 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 38.0 3.40e-01 83.7% 94.4%
3721364 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.51 43.0 3.88e-01 96.2% 85.2%
3500048 206.1.1.17 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.50 42.0 2.97e-01 100.0% 47.3%
4932472 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 43.0 4.12e-01 96.2% 81.1%
4785457 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 39.0 2.60e-01 82.5% 72.8%
5073525 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 40.0 3.59e-01 92.5% 80.8%
3400623 284.1.3.13 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › PF30019 0.50 33.0 3.41e-01 82.5% 70.7%
4325086 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.50 38.0 3.56e-01 82.5% 93.2%