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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00985
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00985
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-197
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00288__D47-185
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08805.17 best | PilS | 29.3 | 1.10e-06 | 81.3% | 60.1% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fhvA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.77 | 71.0 | 7.22e-01 | 99.4% | 99.3% |
| 3s0tA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.73 | 70.0 | 6.58e-01 | 100.0% | 98.3% |
| 1oqvA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.69 | 64.0 | 6.25e-01 | 100.0% | 98.2% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.61 | 32.0 | 4.24e-01 | 91.6% | 95.1% |
| 3w5nA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 36.0 | 3.52e-01 | 99.4% | 56.9% |
| 3kptA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 34.0 | 3.60e-01 | 99.4% | 71.6% |
| 5nz7A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.51 | 42.0 | 3.33e-01 | 88.4% | 79.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517458 | 274.1.1.10 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS | 0.84 | 65.0 | 7.25e-01 | 100.0% | 99.2% |
| 149275 | 274.1.1.7 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › TcpA | 0.73 | 70.0 | 6.58e-01 | 100.0% | 98.3% |
| 4617348 | 274.1.1.7 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › TcpA | 0.70 | 65.0 | 6.20e-01 | 100.0% | 93.9% |
| 6675 | 274.1.1.10 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS | 0.65 | 59.0 | 5.91e-01 | 100.0% | 96.2% |
| 5057372 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 37.0 | 4.34e-01 | 100.0% | 84.5% |
| 3275765 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 30.0 | 3.58e-01 | 91.6% | 70.9% |
| 4016981 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 33.0 | 2.77e-01 | 79.4% | 34.3% |
| 3672683 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 35.0 | 3.80e-01 | 100.0% | 74.1% |
| 3684418 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.55 | 35.0 | 3.27e-01 | 80.0% | 50.3% |
| 3611301 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 3.78e-01 | 81.3% | 77.8% |
| 3197476 | 10.32.1.42 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PINIT | 0.51 | 36.0 | 3.81e-01 | 100.0% | 80.0% |
| 4272976 | 5095.1.1.1 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 | 0.51 | 38.0 | 3.97e-01 | 99.4% | 84.1% |