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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01084

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01084

Identity

Kingdom:
phage

Quality

84.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-92
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dceA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.77 58.0 3.77e-01 78.0% 26.2%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 52.0 5.73e-01 91.5% 100.0%
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.72 55.0 4.75e-01 97.6% 51.5%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 55.0 4.73e-01 98.8% 52.7%
2l7kA00 1.10.10.1850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sporulation protein-like 0.69 44.0 4.61e-01 86.6% 71.1%
2gnxA01 1.10.3450.30 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › 0.67 49.0 3.81e-01 76.8% 43.6%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 58.0 4.97e-01 100.0% 94.9%
4y5jA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 49.0 3.53e-01 93.9% 28.6%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 49.0 4.62e-01 82.9% 100.0%
3tjzB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 47.0 3.28e-01 78.0% 35.2%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 53.0 4.82e-01 100.0% 67.2%
4g3aB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 47.0 3.41e-01 95.1% 28.2%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.61 50.0 4.40e-01 90.2% 95.1%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 34.0 3.82e-01 81.7% 72.9%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 48.0 3.99e-01 85.4% 97.3%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 3.93e-01 85.4% 95.9%
1x46A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 47.0 3.93e-01 87.8% 94.0%
1wp9B03 1.20.1320.20 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain 0.60 45.0 3.86e-01 82.9% 50.8%
1dvpA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 48.0 4.06e-01 90.2% 77.9%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 45.0 3.94e-01 82.9% 55.6%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 3.75e-01 76.8% 80.2%
2ce7B03 1.20.58.760 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Peptidase M41 0.58 45.0 3.58e-01 82.9% 63.1%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.58 50.0 4.23e-01 97.6% 92.8%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 46.0 3.82e-01 90.2% 98.0%
4hn9A02 1.20.58.2180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 4.06e-01 70.7% 82.4%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 50.0 4.04e-01 96.3% 52.9%
1z9eA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.56 43.0 4.36e-01 89.0% 83.1%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.56e-01 79.3% 50.8%
4ixjA02 3.30.1690.20 Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › 0.56 45.0 3.74e-01 87.8% 81.6%
5cwkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 42.0 3.42e-01 89.0% 40.5%
3p9dG01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.56 46.0 3.41e-01 97.6% 70.8%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 43.0 4.01e-01 82.9% 98.0%
1hx8A02 1.20.58.150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › ANTH domain 0.54 41.0 3.64e-01 80.5% 87.2%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 42.0 4.11e-01 87.8% 96.8%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 46.0 3.54e-01 100.0% 58.0%
7tm7B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 46.0 2.93e-01 100.0% 52.0%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.64e-01 91.5% 97.0%
3d3mA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 46.0 3.72e-01 100.0% 56.5%
4a15A03 1.10.275.40 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.51 44.0 3.78e-01 100.0% 67.9%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.44e-01 100.0% 72.0%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 43.0 3.62e-01 100.0% 73.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054950 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.79 71.0 6.18e-01 100.0% 71.2%
4175280 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.76 68.0 6.27e-01 100.0% 82.9%
4173849 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.75 68.0 6.14e-01 100.0% 74.5%
4097981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.73 65.0 5.96e-01 100.0% 77.1%
5022016 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.72 60.0 5.70e-01 100.0% 77.9%
4566333 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.72 64.0 5.99e-01 100.0% 81.0%
4579981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.72 64.0 5.84e-01 100.0% 78.2%
4069480 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.71 63.0 5.76e-01 100.0% 74.5%
4142699 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.71 61.0 5.73e-01 100.0% 78.0%
4396981 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.71 63.0 5.91e-01 100.0% 81.0%
4954763 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.71 60.0 5.85e-01 100.0% 85.6%
4063794 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.71 63.0 5.72e-01 100.0% 78.2%
4520087 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.68 61.0 5.71e-01 100.0% 86.0%
3589876 186.1.1.3 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.68 59.0 5.52e-01 100.0% 79.0%
3291009 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.67 57.0 5.30e-01 100.0% 74.3%
3700785 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 39.0 4.36e-01 85.4% 73.8%
3686 4266.3.1.1 alpha bundles › Hyaluronidase domain-like › FLJ32549 domain-like › FLJ32549 domain-like › C12orf66_like 0.66 49.0 4.06e-01 79.3% 53.1%
3605793 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.65 46.0 4.82e-01 73.2% 80.0%
3925309 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 48.0 2.87e-01 79.3% 11.9%
3979101 186.1.1.8 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.64 56.0 4.92e-01 100.0% 65.8%
4488057 109.4.1.155 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med23 0.64 47.0 3.42e-01 80.5% 50.8%
4169641 138.1.1.2 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.62 43.0 4.17e-01 70.7% 74.4%
5054502 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 45.0 4.24e-01 81.7% 63.0%
3647808 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 49.0 4.43e-01 87.8% 65.2%
3773614 109.4.1.1870 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_MROH2B_C 0.62 46.0 2.70e-01 80.5% 14.2%
3611706 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.61 44.0 3.87e-01 78.0% 73.8%
3391470 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 48.0 2.76e-01 90.2% 17.5%
3866648 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.56 43.0 3.53e-01 82.9% 72.5%
3928364 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.38e-01 90.2% 66.7%
3312536 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 44.0 3.66e-01 89.0% 62.5%
3450793 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 43.0 3.66e-01 95.1% 50.0%
3353380 604.6.1.2 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH 0.55 43.0 3.79e-01 87.8% 87.7%
4592728 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.54 44.0 4.28e-01 87.8% 87.8%
55469 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.54 42.0 4.25e-01 87.8% 85.2%
3604935 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 2.92e-01 100.0% 53.1%
3963136 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.53 43.0 3.65e-01 89.0% 67.9%
5025185 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 46.0 3.97e-01 100.0% 71.1%
3490387 101.1.10.12 alpha arrays › HTH › HTH › Cyclin-like › Spy1 0.51 41.0 3.51e-01 98.8% 52.4%
3441839 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.51 41.0 4.25e-01 93.9% 98.6%
3226906 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.50 39.0 3.92e-01 84.1% 81.2%
D2 high residues 106-312
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.73 61.0 6.00e-01 87.0% 94.1%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.73 51.0 5.77e-01 94.2% 91.8%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.72 57.0 6.30e-01 94.2% 98.8%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 56.0 6.04e-01 83.6% 99.4%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.69 58.0 5.76e-01 87.0% 98.6%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 56.0 5.78e-01 87.4% 99.0%
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.66 53.0 5.73e-01 91.3% 96.1%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.65 55.0 5.34e-01 88.9% 93.8%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 25.0 3.55e-01 74.9% 78.4%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 22.0 3.16e-01 96.6% 88.6%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 23.0 2.99e-01 72.5% 73.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 57.0 6.26e-01 87.0% 93.5%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 59.0 6.45e-01 83.1% 100.0%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 57.0 6.06e-01 85.5% 92.8%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 59.0 6.27e-01 87.9% 97.3%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 57.0 6.06e-01 87.0% 95.1%
5012504 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.70 54.0 5.83e-01 95.2% 91.1%
4999495 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 55.0 5.94e-01 91.3% 93.9%
3980071 101.1.8.9 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Integrase_1 0.69 56.0 6.08e-01 85.5% 100.0%
5073434 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 56.0 5.77e-01 94.7% 92.5%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.65 53.0 5.51e-01 84.1% 95.8%
5008693 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 57.0 5.71e-01 92.3% 90.5%
4965640 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 57.0 5.48e-01 94.7% 92.2%
4997941 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 57.0 5.69e-01 95.7% 94.8%
5031467 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 53.0 5.47e-01 91.3% 97.5%
3705943 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 26.0 3.48e-01 86.5% 93.3%