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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01116
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01116
Identity
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 80-218
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00288__D47-185
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05307.17 best | Bundlin | 33.7 | 5.70e-08 | 95.7% | 85.4% |
| PF08805.17 | PilS | 48.2 | 1.60e-12 | 95.0% | 83.3% |
D2
medium
residues 672-743
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3agrA01 | 3.30.420.530 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.68 | 48.0 | 3.40e-01 | 100.0% | 23.8% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.68 | 41.0 | 3.58e-01 | 88.9% | 38.9% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.68 | 43.0 | 3.69e-01 | 87.5% | 40.2% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.68 | 42.0 | 3.61e-01 | 91.7% | 39.8% |
| 6d92A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.67 | 44.0 | 3.07e-01 | 91.7% | 20.1% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 44.0 | 3.91e-01 | 91.7% | 48.5% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.65 | 47.0 | 3.68e-01 | 91.7% | 33.7% |
| 3n4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 41.0 | 3.38e-01 | 81.9% | 37.0% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 42.0 | 3.42e-01 | 88.9% | 38.6% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.61 | 43.0 | 3.62e-01 | 90.3% | 41.9% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 40.0 | 2.57e-01 | 95.8% | 13.4% |
| 4l8oA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 3.22e-01 | 91.7% | 33.5% |
| 3bjsA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 39.0 | 3.38e-01 | 91.7% | 43.6% |
| 2zuoA10 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.57 | 47.0 | 4.08e-01 | 93.1% | 100.0% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 3.78e-01 | 83.3% | 58.6% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.23e-01 | 88.9% | 36.6% |
| 4dkaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 31.0 | 3.02e-01 | 88.9% | 41.9% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 45.0 | 3.51e-01 | 94.4% | 40.3% |
| 3sjnA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 36.0 | 3.13e-01 | 93.1% | 40.3% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 41.0 | 3.36e-01 | 91.7% | 44.1% |
| 1xoiA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 40.0 | 2.47e-01 | 84.7% | 14.1% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.53 | 45.0 | 3.14e-01 | 97.2% | 45.9% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 43.0 | 2.67e-01 | 100.0% | 14.0% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.52 | 44.0 | 2.98e-01 | 95.8% | 97.6% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 41.0 | 3.57e-01 | 86.1% | 64.6% |
| 3hrdC02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 33.0 | 2.90e-01 | 97.2% | 40.7% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.52 | 34.0 | 2.38e-01 | 86.1% | 19.9% |
| 2w3sB04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.51 | 44.0 | 3.22e-01 | 100.0% | 57.0% |
| 4oseB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 2.77e-01 | 90.3% | 28.9% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 40.0 | 3.47e-01 | 86.1% | 67.6% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4986795 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.78 | 50.0 | 3.77e-01 | 88.9% | 28.5% |
| 3569021 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.72 | 61.0 | 4.47e-01 | 95.8% | 36.2% |
| 3471233 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.70 | 45.0 | 2.51e-01 | 90.3% | 4.9% |
| 3600544 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.68 | 50.0 | 3.28e-01 | 86.1% | 17.5% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.67 | 42.0 | 4.11e-01 | 87.5% | 57.5% |
| 1582440 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.65 | 41.0 | 3.52e-01 | 81.9% | 41.6% |
| 4025866 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 54.0 | 3.49e-01 | 95.8% | 30.1% |
| 3396462 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.64 | 41.0 | 4.33e-01 | 91.7% | 73.8% |
| 3560192 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.64 | 52.0 | 3.56e-01 | 100.0% | 26.2% |
| 4559320 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.63 | 53.0 | 3.89e-01 | 100.0% | 33.7% |
| 3372143 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.62 | 46.0 | 3.80e-01 | 88.9% | 44.8% |
| 3608121 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.62 | 38.0 | 2.61e-01 | 88.9% | 16.7% |
| 3654114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.61 | 47.0 | 3.39e-01 | 83.3% | 29.5% |
| 3815146 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.61 | 48.0 | 3.17e-01 | 93.1% | 19.7% |
| 3853920 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.60 | 49.0 | 3.36e-01 | 94.4% | 25.6% |
| 3595478 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.59 | 50.0 | 3.43e-01 | 94.4% | 30.0% |
| 3600592 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.59 | 41.0 | 3.13e-01 | 88.9% | 28.9% |
| 3222710 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 40.0 | 3.91e-01 | 87.5% | 64.1% |
| 3734589 | 3080.1.1.2 ↗ | a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Vps62 | 0.59 | 48.0 | 3.11e-01 | 88.9% | 25.3% |
| 3707760 | 2.1.1.225 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 | 0.59 | 46.0 | 3.83e-01 | 83.3% | 62.5% |
| 3702518 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 46.0 | 3.96e-01 | 83.3% | 70.9% |
| 4025160 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 45.0 | 3.76e-01 | 83.3% | 60.8% |
| 3192454 | 213.1.1.18 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HAT_KAT11 | 0.58 | 46.0 | 3.00e-01 | 91.7% | 78.9% |
| 3924081 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 45.0 | 3.60e-01 | 83.3% | 52.1% |
| 3645656 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.58 | 46.0 | 4.52e-01 | 90.3% | 78.8% |
| 3600337 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 47.0 | 3.68e-01 | 91.7% | 78.8% |
| 3992476 | 1116.1.1.2 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD | 0.58 | 42.0 | 3.43e-01 | 93.1% | 39.3% |
| 4501100 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.57 | 49.0 | 3.52e-01 | 98.6% | 38.2% |
| 5019602 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 45.0 | 3.90e-01 | 88.9% | 77.5% |
| 3734022 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.57 | 47.0 | 3.22e-01 | 94.4% | 25.7% |
| 3214167 | 2007.2.4.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › PF27561 | 0.57 | 44.0 | 2.79e-01 | 88.9% | 25.0% |
| 3796739 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 43.0 | 4.21e-01 | 91.7% | 76.2% |
| 3652419 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.56 | 45.0 | 3.82e-01 | 91.7% | 53.3% |
| 3464478 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.56 | 42.0 | 3.34e-01 | 95.8% | 38.7% |
| 4844428 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.55 | 37.0 | 3.68e-01 | 91.7% | 66.7% |
| 3263244 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 39.0 | 3.95e-01 | 87.5% | 74.3% |
| 3921085 | 220.1.1.151 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK | 0.55 | 37.0 | 3.05e-01 | 94.4% | 37.8% |
| 4234065 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.54 | 44.0 | 3.56e-01 | 88.9% | 94.9% |
| 3788285 | 395.1.1.4 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 | 0.54 | 36.0 | 4.13e-01 | 87.5% | 100.0% |
| 5075588 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.54 | 36.0 | 3.39e-01 | 86.1% | 55.6% |
| 3974473 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.54 | 38.0 | 3.15e-01 | 91.7% | 39.3% |
| 4939324 | 5.1.4.559 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_propel | 0.53 | 45.0 | 2.98e-01 | 98.6% | 24.3% |
| 3599587 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 40.0 | 3.05e-01 | 93.1% | 32.4% |
| 3788029 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.53 | 39.0 | 2.77e-01 | 87.5% | 24.2% |
| 3404065 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.53 | 36.0 | 3.57e-01 | 91.7% | 65.0% |
| 4939392 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.52 | 42.0 | 3.68e-01 | 90.3% | 93.9% |
| 4170378 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.52 | 42.0 | 3.57e-01 | 86.1% | 64.3% |
| 3828275 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.51 | 38.0 | 2.87e-01 | 84.7% | 31.7% |
| 3359931 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.67e-01 | 94.4% | 96.7% |
| 4995721 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.51 | 41.0 | 3.50e-01 | 91.7% | 92.8% |
D3
medium
residues 748-820
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01116__D672-743