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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01143
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01143
Identity
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-61
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.86 | 57.0 | 6.56e-01 | 78.4% | 100.0% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.63 | 48.0 | 4.40e-01 | 88.2% | 85.1% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 47.0 | 4.08e-01 | 82.4% | 95.1% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.62 | 45.0 | 4.34e-01 | 100.0% | 68.9% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.61 | 49.0 | 3.57e-01 | 100.0% | 81.9% |
| 4bd9B01 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.60 | 38.0 | 3.77e-01 | 100.0% | 61.1% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.60 | 44.0 | 4.21e-01 | 88.2% | 100.0% |
| 6qlyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 42.0 | 3.71e-01 | 84.3% | 48.2% |
| 2jfdA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.59 | 43.0 | 4.07e-01 | 80.4% | 89.4% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.58 | 37.0 | 3.66e-01 | 100.0% | 57.9% |
| 1bikA00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.58 | 38.0 | 3.01e-01 | 100.0% | 30.0% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.58 | 45.0 | 3.43e-01 | 90.2% | 64.5% |
| 5yv7A00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.56 | 37.0 | 3.53e-01 | 100.0% | 56.7% |
| 2hg6A00 | 3.90.1650.10 | Alpha Beta › Alpha-Beta Complex › PA1123-like › PA1123-like | 0.56 | 47.0 | 3.74e-01 | 96.1% | 53.8% |
| 2vfrA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.56 | 39.0 | 3.00e-01 | 76.5% | 30.8% |
| 4ntwB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.56 | 36.0 | 3.55e-01 | 100.0% | 57.6% |
| 3snoA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.55 | 39.0 | 3.13e-01 | 78.4% | 95.9% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.64e-01 | 74.5% | 88.6% |
| 2ypjA00 | 2.60.120.1070 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 3.23e-01 | 82.4% | 44.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 39.0 | 2.92e-01 | 82.4% | 48.5% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.55 | 39.0 | 2.61e-01 | 80.4% | 36.1% |
| 6q61A00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.55 | 36.0 | 3.50e-01 | 100.0% | 57.6% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 3.61e-01 | 100.0% | 54.8% |
| 1eucB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 46.0 | 3.31e-01 | 96.1% | 69.0% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 43.0 | 3.75e-01 | 98.0% | 85.9% |
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 37.0 | 3.33e-01 | 92.2% | 47.6% |
| 2hfqA00 | 3.10.510.10 | Alpha Beta › Roll › NE1680-like fold › NE1680-like | 0.54 | 38.0 | 3.41e-01 | 82.4% | 63.5% |
| 5j3tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 38.0 | 2.99e-01 | 80.4% | 61.1% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 37.0 | 3.83e-01 | 78.4% | 93.9% |
| 6womA02 | 3.30.1360.30 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain | 0.52 | 37.0 | 2.89e-01 | 82.4% | 82.9% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 39.0 | 2.49e-01 | 90.2% | 13.7% |
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.74e-01 | 76.5% | 100.0% |
| 6eo5B01 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 38.0 | 2.56e-01 | 86.3% | 30.6% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 40.0 | 2.54e-01 | 98.0% | 32.9% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 2.74e-01 | 82.4% | 93.6% |
| 4n0rA03 | 2.60.40.3950 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.03e-01 | 82.4% | 49.1% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.63e-01 | 100.0% | 58.1% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4304758 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.76 | 55.0 | 3.90e-01 | 84.3% | 25.8% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.73 | 42.0 | 4.28e-01 | 100.0% | 58.0% |
| 4927584 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.68 | 48.0 | 4.73e-01 | 76.5% | 100.0% |
| 5056818 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.67 | 45.0 | 4.15e-01 | 80.4% | 51.4% |
| 3624908 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.65 | 47.0 | 4.02e-01 | 80.4% | 77.8% |
| 3405565 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.64 | 48.0 | 3.98e-01 | 82.4% | 44.2% |
| 3782443 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.64 | 47.0 | 3.31e-01 | 80.4% | 27.9% |
| 4032055 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.64 | 47.0 | 4.37e-01 | 80.4% | 100.0% |
| 4977215 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.63 | 46.0 | 4.36e-01 | 76.5% | 98.3% |
| 3706447 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 48.0 | 3.79e-01 | 88.2% | 40.8% |
| 3949749 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.63 | 47.0 | 4.43e-01 | 84.3% | 100.0% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.62 | 37.0 | 3.89e-01 | 100.0% | 66.7% |
| 3438348 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 41.0 | 3.73e-01 | 98.0% | 49.3% |
| 2813619 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.61 | 48.0 | 3.09e-01 | 88.2% | 47.3% |
| 3409813 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.61 | 39.0 | 3.85e-01 | 100.0% | 60.0% |
| 3934581 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.61 | 38.0 | 4.04e-01 | 100.0% | 73.3% |
| 3911194 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.61 | 44.0 | 3.94e-01 | 82.4% | 87.5% |
| 5007012 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.59 | 42.0 | 4.03e-01 | 76.5% | 100.0% |
| 4310017 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.59 | 45.0 | 4.72e-01 | 86.3% | 95.6% |
| 3644383 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 43.0 | 3.62e-01 | 84.3% | 43.0% |
| 3742058 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 46.0 | 2.78e-01 | 100.0% | 16.7% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.58 | 48.0 | 3.32e-01 | 100.0% | 81.5% |
| 3235460 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 46.0 | 3.56e-01 | 100.0% | 54.3% |
| 3505839 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.57 | 41.0 | 4.46e-01 | 78.4% | 100.0% |
| 3337003 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.57 | 44.0 | 4.11e-01 | 92.2% | 98.6% |
| 3349820 | 1.1.7.101 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ubiquitin_UBP8 | 0.57 | 41.0 | 3.52e-01 | 76.5% | 94.9% |
| 3405569 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.57 | 41.0 | 3.41e-01 | 84.3% | 40.9% |
| 3437270 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 39.0 | 3.70e-01 | 82.4% | 57.1% |
| 5007155 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.56 | 41.0 | 4.35e-01 | 78.4% | 88.9% |
| 5078886 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 46.0 | 3.73e-01 | 100.0% | 48.2% |
| 3595016 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 38.0 | 3.07e-01 | 82.4% | 34.5% |
| 3575366 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.55 | 41.0 | 3.53e-01 | 86.3% | 65.3% |
| 3405563 | 11.1.5.64 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PIG-X | 0.55 | 48.0 | 3.32e-01 | 100.0% | 80.0% |
| 3930218 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.55 | 35.0 | 2.96e-01 | 100.0% | 33.0% |
| 3935405 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 41.0 | 3.55e-01 | 86.3% | 68.9% |
| 3998576 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 42.0 | 3.05e-01 | 90.2% | 33.1% |
| 3897763 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 3.61e-01 | 100.0% | 63.6% |
| 3859590 | 386.1.1.248 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 | 0.54 | 40.0 | 4.08e-01 | 82.4% | 94.0% |
| 4316618 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.54 | 44.0 | 2.73e-01 | 96.1% | 43.8% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.53 | 37.0 | 3.84e-01 | 78.4% | 100.0% |
| 3310843 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 39.0 | 3.50e-01 | 84.3% | 83.7% |
| 4933437 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.53 | 38.0 | 3.12e-01 | 96.1% | 38.0% |
| 5076162 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.53 | 42.0 | 2.59e-01 | 96.1% | 22.1% |
| 3315674 | 375.1.1.178 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn-ribbon_GIR1 | 0.53 | 34.0 | 3.78e-01 | 72.5% | 97.1% |
| 3935404 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.52 | 37.0 | 3.21e-01 | 78.4% | 53.3% |
| 3433661 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.52 | 37.0 | 4.04e-01 | 100.0% | 100.0% |
| 3535929 | 386.1.1.248 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 | 0.52 | 38.0 | 2.79e-01 | 84.3% | 26.9% |
| 4928962 | 375.5.1.0 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like | 0.52 | 42.0 | 4.06e-01 | 98.0% | 98.3% |
| 5042070 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 37.0 | 3.51e-01 | 78.4% | 98.5% |
| 4026201 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.52 | 39.0 | 2.94e-01 | 90.2% | 96.8% |
| 5071118 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.51 | 36.0 | 3.46e-01 | 80.4% | 100.0% |
| 3409245 | 223.2.1.36 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 | 0.51 | 39.0 | 3.15e-01 | 88.2% | 43.0% |
| 5056189 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.51 | 35.0 | 3.81e-01 | 100.0% | 95.0% |
| 146929 | 3115.3.1.1 ↗ | a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 | 0.51 | 36.0 | 3.56e-01 | 82.4% | 85.7% |
| 5041529 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.51 | 36.0 | 2.99e-01 | 82.4% | 90.3% |
| 3404684 | 10.12.1.84 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › VKGC_lumenal_dom | 0.50 | 41.0 | 2.80e-01 | 96.1% | 87.6% |