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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01166

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01166

Identity

Kingdom:
phage

Quality

90.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-69_88-115
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qfvC02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.76 50.0 5.82e-01 91.4% 95.4%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 56.0 5.54e-01 100.0% 77.3%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 54.0 3.69e-01 100.0% 24.0%
6if3A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 54.0 4.50e-01 97.8% 47.8%
1wdyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.70 55.0 3.83e-01 100.0% 27.0%
6ghmC01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 53.0 4.67e-01 98.9% 56.0%
4zhbA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 51.0 4.96e-01 100.0% 70.2%
1s70B01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 52.0 4.30e-01 98.9% 46.3%
1dcqA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.67 57.0 4.75e-01 100.0% 54.1%
3twqA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.67 55.0 4.50e-01 98.9% 50.0%
7kb2B01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.66 54.0 4.42e-01 98.9% 47.5%
3eu9C00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.65 54.0 4.04e-01 98.9% 36.7%
3b7bB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.65 54.0 4.05e-01 98.9% 37.1%
5z2mB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.65 56.0 4.88e-01 100.0% 62.8%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.65 48.0 4.49e-01 78.5% 75.2%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.65 48.0 4.78e-01 78.5% 87.8%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 49.0 4.82e-01 91.4% 77.2%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 42.0 4.54e-01 79.6% 88.0%
1oe8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 49.0 4.42e-01 86.0% 70.2%
4uucA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.60 55.0 4.12e-01 100.0% 45.2%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 48.0 4.36e-01 92.5% 65.0%
5aarA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 54.0 4.27e-01 100.0% 53.5%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.59 48.0 4.78e-01 91.4% 85.0%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 35.0 3.56e-01 93.5% 59.8%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 47.0 3.98e-01 87.1% 56.3%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.57 45.0 3.90e-01 83.9% 63.6%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 49.0 4.18e-01 94.6% 71.2%
3m6jA01 1.20.1260.40 Mainly Alpha › Up-down Bundle › Ferritin › 0.57 45.0 4.16e-01 83.9% 93.2%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.56 44.0 4.28e-01 90.3% 75.2%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 4.11e-01 79.6% 81.4%
1h6gA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 42.0 3.93e-01 81.7% 67.2%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 3.59e-01 100.0% 37.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 34.0 3.79e-01 91.4% 80.3%
2r7rA03 1.10.10.1990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Viral RNA-directed RNA polymerase, 4-helical domain 0.53 33.0 3.62e-01 98.9% 76.3%
5tpmB00 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 37.0 3.30e-01 74.2% 78.0%
3mkqB00 1.25.40.470 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 34.0 2.81e-01 98.9% 35.0%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.51 41.0 3.65e-01 88.2% 72.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4891160 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.81 50.0 6.14e-01 88.2% 100.0%
3621664 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.76 69.0 5.29e-01 98.9% 45.9%
5046120 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.75 59.0 5.27e-01 100.0% 61.6%
5046121 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.74 58.0 4.61e-01 100.0% 43.4%
3840470 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.74 60.0 4.98e-01 100.0% 51.3%
3736954 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.73 57.0 5.03e-01 100.0% 58.5%
3454168 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.73 55.0 4.38e-01 97.8% 41.1%
335803 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.73 56.0 5.54e-01 100.0% 77.3%
3483976 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.73 57.0 4.65e-01 100.0% 46.7%
3666883 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.72 56.0 4.99e-01 100.0% 60.0%
2494233 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.72 56.0 4.16e-01 100.0% 34.2%
2392079 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 56.0 3.97e-01 100.0% 28.9%
376538 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.72 56.0 4.98e-01 100.0% 59.4%
1596743 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.72 54.0 4.22e-01 100.0% 38.8%
2482367 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.72 55.0 4.29e-01 100.0% 39.5%
2482371 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.72 56.0 4.30e-01 100.0% 39.2%
2792300 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.72 55.0 4.93e-01 98.9% 58.9%
2165995 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.72 55.0 4.56e-01 100.0% 47.2%
2136418 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.71 55.0 3.79e-01 100.0% 25.2%
4014075 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.71 55.0 4.13e-01 100.0% 35.5%
3879261 109.3.1.168 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.71 55.0 3.88e-01 100.0% 28.0%
3234451 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.70 55.0 4.92e-01 100.0% 60.8%
4022893 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.70 54.0 5.39e-01 100.0% 80.0%
3536600 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.70 54.0 4.51e-01 100.0% 48.1%
3911998 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.69 54.0 5.20e-01 100.0% 74.3%
4574160 109.3.1.170 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.68 53.0 4.70e-01 100.0% 58.5%
3822314 109.3.1.164 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.68 54.0 4.75e-01 100.0% 58.5%
3749173 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.68 53.0 4.99e-01 100.0% 70.0%
4999823 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.67 54.0 5.73e-01 93.5% 100.0%
4015599 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 54.0 4.41e-01 98.9% 48.2%
3577938 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.66 52.0 3.76e-01 100.0% 30.4%
4000388 109.4.1.1361 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 0.66 58.0 3.87e-01 96.8% 37.2%
3922541 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.65 55.0 4.04e-01 100.0% 35.4%
3244143 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.65 54.0 4.75e-01 98.9% 61.5%
3808853 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.65 58.0 3.76e-01 100.0% 35.1%
3762828 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.64 53.0 3.53e-01 98.9% 23.8%
3315444 109.3.1.165 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 0.64 53.0 3.47e-01 98.9% 21.8%
3830116 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.63 53.0 4.22e-01 92.5% 59.5%
4983960 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.63 50.0 5.29e-01 91.4% 100.0%
4976428 4995.1.1.0 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.61 50.0 5.21e-01 90.3% 98.8%
3797479 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 55.0 3.77e-01 100.0% 30.6%
3501907 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 55.0 4.29e-01 100.0% 72.3%
5041259 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.60 47.0 4.98e-01 88.2% 97.5%
2940559 109.3.1.165 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 0.60 55.0 3.18e-01 100.0% 13.5%
3619078 109.3.1.130 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TRPM2 0.59 50.0 4.31e-01 91.4% 95.2%
3500406 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 53.0 3.53e-01 100.0% 29.7%
3797721 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 52.0 4.14e-01 100.0% 56.8%
3273679 207.1.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.57 46.0 3.78e-01 89.2% 53.1%
4079471 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.56 43.0 3.06e-01 81.7% 64.4%
5057208 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.55 33.0 3.31e-01 88.2% 56.0%
3923736 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.55 43.0 3.80e-01 93.5% 57.1%
3196470 109.59.1.0 alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain 0.55 42.0 4.27e-01 97.8% 86.5%
3925558 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.53 42.0 3.71e-01 93.5% 55.9%
D2 medium residues 116-244
PDB
Pfam (6)
AccessionNameScoreE-valueQ covHMM cov
PF12796.14 best Ank_2 50.1 4.60e-13 72.1% 84.4%
PF12796.14 Ank_2 34.3 4.10e-08 60.5% 71.1%
PF13857.13 Ank_5 31.2 3.00e-07 42.6% 100.0%
PF13637.13 Ank_4 23.8 6.30e-05 34.9% 86.0%
PF13637.13 Ank_4 34.3 3.00e-08 34.9% 76.0%
PF00023.37 Ank 20.5 6.40e-04 25.6% 93.9%