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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01167
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01167
Identity
- Kingdom:
- phage
Quality
78.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-101
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01167__D150-235
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 50.0 | 4.29e-01 | 90.9% | 85.1% |
| 1di1A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 41.0 | 3.04e-01 | 78.8% | 96.2% |
| 1z01A01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.55 | 48.0 | 3.56e-01 | 100.0% | 68.9% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.54 | 40.0 | 3.29e-01 | 79.8% | 88.5% |
| 6lccA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 40.0 | 2.84e-01 | 81.8% | 64.3% |
| 1gkaB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 43.0 | 3.59e-01 | 89.9% | 78.7% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.52 | 42.0 | 4.12e-01 | 88.9% | 88.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3183463 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.62 | 44.0 | 4.32e-01 | 74.7% | 89.1% |
| 4336238 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.57 | 39.0 | 3.94e-01 | 70.7% | 94.0% |
| 3915542 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.55 | 36.0 | 3.96e-01 | 79.8% | 82.5% |
| 3763572 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.55 | 41.0 | 3.54e-01 | 78.8% | 88.4% |
| 4451493 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.55 | 43.0 | 3.64e-01 | 85.9% | 74.4% |
| 4210618 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.55 | 40.0 | 2.65e-01 | 77.8% | 44.0% |
| 4479376 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.54 | 42.0 | 4.04e-01 | 83.8% | 83.5% |
| 3602012 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.54 | 35.0 | 4.08e-01 | 76.8% | 94.3% |
| 4494621 | 3264.1.1.0 ↗ | 0.54 | 45.0 | 4.03e-01 | 96.0% | 96.7% | |
| 3462595 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 36.0 | 3.78e-01 | 91.9% | 80.0% |
| 4963287 | 375.1.1.334 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 | 0.52 | 30.0 | 3.67e-01 | 89.9% | 100.0% |
| 3283507 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.51 | 41.0 | 4.31e-01 | 85.9% | 93.3% |
| 3271694 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.51 | 42.0 | 3.29e-01 | 94.9% | 88.9% |
D2
high
residues 150-235
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dl5A02 | 3.55.20.10 | Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain | 0.59 | 43.0 | 3.94e-01 | 86.0% | 57.8% |
| 4whiA00 | 2.40.128.600 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 41.0 | 3.93e-01 | 79.1% | 85.3% |
| 3brnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 47.0 | 3.99e-01 | 94.2% | 82.4% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 44.0 | 4.21e-01 | 84.9% | 99.0% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.56 | 40.0 | 4.34e-01 | 79.1% | 90.3% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.55 | 43.0 | 3.95e-01 | 87.2% | 89.9% |
| 2z3zA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.55 | 41.0 | 2.74e-01 | 82.6% | 50.6% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 41.0 | 3.66e-01 | 81.4% | 96.8% |
| 5h4eA02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.54 | 39.0 | 3.63e-01 | 79.1% | 86.6% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 37.0 | 3.64e-01 | 73.3% | 79.1% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.52 | 43.0 | 4.05e-01 | 94.2% | 97.3% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 36.0 | 2.38e-01 | 73.3% | 93.1% |
| 3gb0A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 37.0 | 2.72e-01 | 79.1% | 83.9% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.50 | 40.0 | 2.82e-01 | 89.5% | 97.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003468 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.79 | 68.0 | 6.36e-01 | 94.2% | 90.5% |
| 3587270 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 59.0 | 5.34e-01 | 94.2% | 73.9% |
| 3232669 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.58 | 39.0 | 3.67e-01 | 70.9% | 82.7% |
| 3538687 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.57 | 44.0 | 4.11e-01 | 81.4% | 93.3% |
| 3613225 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.57 | 43.0 | 4.02e-01 | 81.4% | 99.1% |
| 3275610 | 304.112.1.1 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoL1 | 0.56 | 48.0 | 3.95e-01 | 96.5% | 79.4% |
| 5026029 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.56 | 44.0 | 3.36e-01 | 84.9% | 97.0% |
| 3416069 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 39.0 | 4.28e-01 | 93.0% | 92.9% |
| 3232913 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.52 | 38.0 | 3.01e-01 | 77.9% | 84.3% |
| 3999634 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.51 | 38.0 | 3.82e-01 | 79.1% | 100.0% |
D3
medium
residues 245-388_401-415
Domain cluster:
representative
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977893 | 2006.1.3.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TraI_C | 0.66 | 55.0 | 5.60e-01 | 90.6% | 91.0% |
| 3945468 | 2006.1.3.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TraI_C | 0.63 | 56.0 | 4.89e-01 | 95.0% | 76.5% |
| 3511274 | 3860.1.1.61 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › TraI_C | 0.60 | 55.0 | 4.60e-01 | 99.4% | 63.0% |
| 5072253 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 40.0 | 4.42e-01 | 94.3% | 97.6% |
| 3491140 | 221.1.2.16 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C | 0.51 | 28.0 | 3.40e-01 | 83.0% | 81.0% |
D4
medium
residues 389-400_416-473_495-543
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.61 | 26.0 | 3.47e-01 | 84.0% | 73.0% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.61 | 32.0 | 4.18e-01 | 77.3% | 92.4% |
| 2ybyA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.59 | 29.0 | 3.64e-01 | 79.8% | 80.0% |
| 1vioA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.59 | 30.0 | 4.02e-01 | 73.9% | 98.3% |
| 3urrA00 | 3.40.930.10 | Alpha Beta › 3-Layer(aba) Sandwich › Mannitol-specific EII; Chain A › Mannitol-specific EII; Chain A | 0.57 | 34.0 | 3.17e-01 | 93.3% | 46.1% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.53 | 26.0 | 3.13e-01 | 72.3% | 69.6% |
| 5xjnA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 45.0 | 3.14e-01 | 96.6% | 69.5% |
| 3mgxB00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 45.0 | 3.21e-01 | 99.2% | 69.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003826 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.79 | 41.0 | 3.12e-01 | 79.0% | 24.0% |
| 3274168 | 243.6.1.11 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PF31203 | 0.64 | 31.0 | 3.99e-01 | 79.8% | 81.5% |
| 4950846 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.59 | 26.0 | 4.00e-01 | 70.6% | 100.0% |
| 4078120 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.57 | 26.0 | 3.51e-01 | 82.4% | 87.3% |
| 4974775 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.55 | 24.0 | 3.25e-01 | 73.1% | 78.3% |
| 3796083 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.53 | 35.0 | 3.43e-01 | 81.5% | 60.8% |
| 4964720 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.52 | 37.0 | 2.95e-01 | 73.9% | 86.8% |
| 4965393 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.51 | 29.0 | 3.24e-01 | 97.5% | 71.1% |
| 3645395 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.50 | 29.0 | 3.35e-01 | 87.4% | 81.2% |