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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01184
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01184
Identity
- Kingdom:
- phage
Quality
73.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-67
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 66.0 | 6.57e-01 | 92.6% | 92.9% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 62.0 | 5.45e-01 | 100.0% | 80.2% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 60.0 | 5.89e-01 | 94.4% | 100.0% |
| 6tmfT00 | 1.10.60.20 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 | 0.72 | 62.0 | 5.93e-01 | 100.0% | 84.4% |
| 1xvhB00 | 1.20.120.1850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) | 0.71 | 46.0 | 3.50e-01 | 88.9% | 30.5% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.71 | 45.0 | 3.82e-01 | 90.7% | 40.7% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 62.0 | 5.91e-01 | 100.0% | 100.0% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 56.0 | 4.96e-01 | 98.1% | 61.0% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 41.0 | 4.15e-01 | 83.3% | 58.2% |
| 4dveA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.69 | 61.0 | 4.16e-01 | 100.0% | 32.3% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.69 | 58.0 | 4.94e-01 | 100.0% | 67.0% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 56.0 | 5.57e-01 | 98.1% | 87.9% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.68 | 60.0 | 5.42e-01 | 100.0% | 83.6% |
| 5fcxA00 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.67 | 58.0 | 4.39e-01 | 100.0% | 99.3% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 60.0 | 5.51e-01 | 100.0% | 79.7% |
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.67 | 46.0 | 3.41e-01 | 72.2% | 78.5% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 5.30e-01 | 98.1% | 96.0% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.66 | 54.0 | 4.20e-01 | 98.1% | 46.0% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 4.74e-01 | 100.0% | 75.0% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.65 | 52.0 | 5.23e-01 | 92.6% | 96.3% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.65 | 43.0 | 3.19e-01 | 88.9% | 26.0% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 46.0 | 3.34e-01 | 75.9% | 62.7% |
| 2lefA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.63 | 42.0 | 3.66e-01 | 70.4% | 75.6% |
| 3tixB03 | 3.40.50.11490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 49.0 | 3.65e-01 | 88.9% | 46.3% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.62 | 42.0 | 3.68e-01 | 70.4% | 82.3% |
| 3l9tA01 | 1.10.1240.70 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.61 | 47.0 | 4.18e-01 | 100.0% | 56.6% |
| 2lrdA00 | 1.10.10.1840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 45.0 | 4.41e-01 | 98.1% | 73.8% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.61 | 47.0 | 4.12e-01 | 90.7% | 67.8% |
| 2d7lA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.60 | 44.0 | 4.44e-01 | 77.8% | 92.5% |
| 2xrhA00 | 1.20.120.1430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle | 0.58 | 47.0 | 3.91e-01 | 94.4% | 50.0% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 45.0 | 4.34e-01 | 98.1% | 94.1% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 44.0 | 4.11e-01 | 92.6% | 85.1% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 45.0 | 4.05e-01 | 88.9% | 68.4% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 37.0 | 3.77e-01 | 75.9% | 69.1% |
| 4gyoB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 47.0 | 3.54e-01 | 100.0% | 40.3% |
| 1yz5B00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.54 | 45.0 | 2.97e-01 | 92.6% | 23.1% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.53 | 43.0 | 4.23e-01 | 90.7% | 91.2% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 39.0 | 3.84e-01 | 88.9% | 74.6% |
| 2b0cA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 40.0 | 3.87e-01 | 90.7% | 98.5% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.51 | 38.0 | 3.62e-01 | 81.5% | 67.2% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.87e-01 | 90.7% | 95.8% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932863 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.80 | 70.0 | 6.21e-01 | 100.0% | 71.2% |
| 5034762 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.78 | 66.0 | 4.99e-01 | 100.0% | 39.3% |
| 3573652 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 61.0 | 6.26e-01 | 100.0% | 94.0% |
| 3825757 | 101.35.1.23 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate | 0.76 | 66.0 | 6.26e-01 | 100.0% | 89.2% |
| 3657981 | 198.1.1.16 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 | 0.75 | 65.0 | 5.75e-01 | 100.0% | 83.7% |
| 4609007 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.75 | 60.0 | 6.24e-01 | 96.3% | 98.0% |
| 4678981 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 59.0 | 6.10e-01 | 92.6% | 96.0% |
| 3264673 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.74 | 65.0 | 4.92e-01 | 100.0% | 73.8% |
| 3505632 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.74 | 62.0 | 5.59e-01 | 100.0% | 68.8% |
| 3970076 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 58.0 | 6.02e-01 | 96.3% | 98.0% |
| 3937288 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 62.0 | 5.35e-01 | 94.4% | 75.3% |
| 4957413 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.73 | 58.0 | 5.99e-01 | 96.3% | 98.0% |
| 4934674 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 61.0 | 4.54e-01 | 100.0% | 36.0% |
| 4994779 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.73 | 62.0 | 5.42e-01 | 100.0% | 68.2% |
| 4464648 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.73 | 57.0 | 5.49e-01 | 96.3% | 75.4% |
| 2388330 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.72 | 60.0 | 4.62e-01 | 100.0% | 50.4% |
| 3334149 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 61.0 | 6.16e-01 | 98.1% | 98.2% |
| 3641172 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.71 | 59.0 | 5.15e-01 | 100.0% | 61.1% |
| 4995680 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.70 | 59.0 | 5.82e-01 | 100.0% | 95.0% |
| 3881313 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 56.0 | 5.40e-01 | 100.0% | 78.5% |
| 4953832 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.70 | 56.0 | 5.65e-01 | 100.0% | 92.7% |
| 3467989 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 58.0 | 5.67e-01 | 98.1% | 90.0% |
| 3909922 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.69 | 56.0 | 5.77e-01 | 94.4% | 100.0% |
| 3251233 | 2004.5.1.8 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › C9orf72-like | 0.68 | 58.0 | 3.86e-01 | 100.0% | 23.0% |
| 3712603 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.68 | 58.0 | 5.42e-01 | 100.0% | 77.1% |
| 5079733 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 4.90e-01 | 100.0% | 65.3% |
| 3255275 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 58.0 | 5.62e-01 | 100.0% | 95.0% |
| 4189431 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.58e-01 | 100.0% | 100.0% |
| 3471257 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.65 | 44.0 | 3.47e-01 | 70.4% | 58.2% |
| 4362811 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 55.0 | 5.57e-01 | 100.0% | 100.0% |
| 3313375 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.63 | 45.0 | 3.53e-01 | 75.9% | 57.4% |
| 3781503 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 52.0 | 5.27e-01 | 94.4% | 92.7% |
| 3176953 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.63 | 45.0 | 4.11e-01 | 75.9% | 91.4% |
| 3870171 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.62 | 51.0 | 4.79e-01 | 94.4% | 100.0% |
| 3999913 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 52.0 | 3.87e-01 | 100.0% | 34.8% |
| 3455407 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 49.0 | 4.97e-01 | 100.0% | 98.2% |
| 5067264 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.61 | 48.0 | 3.81e-01 | 90.7% | 50.0% |
| 3454767 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 49.0 | 4.91e-01 | 100.0% | 98.2% |
| 3470186 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.60 | 41.0 | 3.53e-01 | 72.2% | 53.3% |
| 3688281 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.59 | 45.0 | 3.71e-01 | 81.5% | 60.0% |
| 4956322 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.59 | 47.0 | 3.28e-01 | 98.1% | 30.7% |
| 3428283 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 47.0 | 4.68e-01 | 100.0% | 90.0% |
| 3506153 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.50 | 43.0 | 3.70e-01 | 92.6% | 63.9% |