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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01260
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01260
Identity
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 197-240
Domain cluster:
representative
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.71 | 60.0 | 3.78e-01 | 100.0% | 29.8% |
| 2x8kA02 | 6.20.370.30 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.67 | 38.0 | 4.04e-01 | 84.1% | 100.0% |
| 3d9rB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 54.0 | 4.02e-01 | 100.0% | 36.8% |
| 4fumA01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.66 | 57.0 | 4.84e-01 | 100.0% | 86.5% |
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 49.0 | 3.84e-01 | 84.1% | 37.0% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.65 | 47.0 | 4.01e-01 | 90.9% | 44.6% |
| 4it7A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 55.0 | 4.23e-01 | 100.0% | 53.3% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.65 | 48.0 | 4.72e-01 | 90.9% | 77.1% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 52.0 | 3.75e-01 | 100.0% | 68.0% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.64 | 40.0 | 3.38e-01 | 100.0% | 35.9% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.63 | 51.0 | 3.58e-01 | 100.0% | 27.3% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.63 | 47.0 | 4.19e-01 | 95.5% | 56.1% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 43.0 | 4.51e-01 | 93.2% | 89.2% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 46.0 | 3.46e-01 | 95.5% | 28.9% |
| 3mg1B02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 48.0 | 3.64e-01 | 93.2% | 32.8% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 49.0 | 3.62e-01 | 95.5% | 36.4% |
| 1f20A02 | 1.20.990.10 | Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 | 0.61 | 50.0 | 3.50e-01 | 97.7% | 47.8% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.61 | 44.0 | 3.60e-01 | 90.9% | 39.8% |
| 1cs6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 53.0 | 4.03e-01 | 100.0% | 61.0% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 50.0 | 3.76e-01 | 97.7% | 38.8% |
| 2q2eB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.61 | 45.0 | 2.97e-01 | 95.5% | 17.2% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 47.0 | 3.99e-01 | 100.0% | 50.6% |
| 3a0rA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 45.0 | 3.61e-01 | 95.5% | 37.7% |
| 2ltjA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.60 | 46.0 | 3.71e-01 | 100.0% | 56.8% |
| 4iykA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 49.0 | 3.71e-01 | 97.7% | 72.9% |
| 6n90A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.59 | 41.0 | 3.37e-01 | 93.2% | 37.5% |
| 1y1uA02 | 2.60.40.630 | Mainly Beta › Sandwich › Immunoglobulin-like › STAT transcription factor, DNA-binding domain | 0.59 | 47.0 | 3.54e-01 | 97.7% | 70.0% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 47.0 | 3.76e-01 | 100.0% | 40.9% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.59 | 51.0 | 3.46e-01 | 100.0% | 98.2% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 46.0 | 3.70e-01 | 97.7% | 44.1% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 41.0 | 3.54e-01 | 84.1% | 44.9% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 43.0 | 3.41e-01 | 86.4% | 48.6% |
| 3c8cB02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 44.0 | 3.47e-01 | 95.5% | 36.3% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 39.0 | 4.07e-01 | 93.2% | 84.2% |
| 1jhnA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 44.0 | 2.95e-01 | 100.0% | 18.1% |
| 8in8C01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 43.0 | 2.81e-01 | 95.5% | 17.6% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.56 | 39.0 | 2.96e-01 | 86.4% | 28.4% |
| 3wodG00 | 2.30.30.1250 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 43.0 | 3.29e-01 | 95.5% | 33.1% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.55 | 40.0 | 3.36e-01 | 95.5% | 40.2% |
| 4hsqA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.27e-01 | 100.0% | 72.2% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.55 | 42.0 | 2.68e-01 | 100.0% | 14.2% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 40.0 | 2.98e-01 | 90.9% | 26.4% |
| 3vrdB03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.54 | 44.0 | 3.87e-01 | 97.7% | 68.9% |
| 3c8iA00 | 2.40.410.10 | Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily | 0.54 | 44.0 | 3.25e-01 | 95.5% | 88.2% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 37.0 | 3.02e-01 | 79.5% | 58.3% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 45.0 | 3.59e-01 | 100.0% | 98.9% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.19e-01 | 97.7% | 65.6% |
| 3bqjA01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.52 | 39.0 | 2.78e-01 | 100.0% | 85.1% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 39.0 | 3.14e-01 | 88.6% | 58.6% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 36.0 | 2.92e-01 | 81.8% | 44.5% |
| 1m4uA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 41.0 | 3.13e-01 | 100.0% | 37.2% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 41.0 | 3.27e-01 | 97.7% | 46.7% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 36.0 | 2.59e-01 | 84.1% | 22.9% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 41.0 | 3.10e-01 | 100.0% | 41.2% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.51 | 40.0 | 2.76e-01 | 97.7% | 98.4% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 38.0 | 2.54e-01 | 100.0% | 60.0% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 2.90e-01 | 100.0% | 31.1% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.50 | 39.0 | 2.82e-01 | 100.0% | 91.3% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.50 | 41.0 | 2.99e-01 | 100.0% | 48.2% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036533 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.72 | 54.0 | 3.42e-01 | 81.8% | 20.4% |
| 4599318 | 2.1.1.299 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 | 0.71 | 54.0 | 4.54e-01 | 90.9% | 47.5% |
| 3596150 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.71 | 58.0 | 3.76e-01 | 100.0% | 23.9% |
| 3372251 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.70 | 56.0 | 4.89e-01 | 100.0% | 58.6% |
| 3670792 | 243.3.1.67 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C | 0.69 | 50.0 | 4.51e-01 | 93.2% | 55.4% |
| 3924083 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.69 | 52.0 | 3.61e-01 | 97.7% | 22.9% |
| 3466996 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.68 | 56.0 | 4.12e-01 | 93.2% | 54.2% |
| 5002376 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 52.0 | 4.16e-01 | 93.2% | 41.0% |
| 3670182 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.67 | 51.0 | 3.75e-01 | 95.5% | 30.4% |
| 3432106 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.66 | 52.0 | 3.92e-01 | 93.2% | 33.6% |
| 4344942 | 10.9.1.3 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C | 0.66 | 55.0 | 3.92e-01 | 100.0% | 98.0% |
| 3932155 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.66 | 53.0 | 3.29e-01 | 93.2% | 20.0% |
| 3223921 | 2484.1.1.259 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 | 0.65 | 50.0 | 4.14e-01 | 100.0% | 45.6% |
| 3451832 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 50.0 | 4.02e-01 | 97.7% | 43.3% |
| 3479080 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.64 | 46.0 | 3.81e-01 | 93.2% | 40.9% |
| 3237613 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 51.0 | 3.81e-01 | 97.7% | 33.1% |
| 3284250 | 706.2.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.63 | 52.0 | 4.41e-01 | 97.7% | 83.7% |
| 3807566 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.63 | 48.0 | 3.39e-01 | 88.6% | 25.8% |
| None | — | 0.63 | 48.0 | 2.62e-01 | 100.0% | 4.5% | |
| 3854926 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.62 | 51.0 | 3.02e-01 | 100.0% | 13.3% |
| 3600290 | 109.54.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 | 0.62 | 48.0 | 2.61e-01 | 100.0% | 4.3% |
| 5082652 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.62 | 50.0 | 3.69e-01 | 100.0% | 32.8% |
| 3699700 | 5.1.4.263 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_2nd | 0.62 | 47.0 | 2.65e-01 | 100.0% | 5.8% |
| 4140312 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.62 | 51.0 | 4.66e-01 | 100.0% | 67.7% |
| 3713176 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.62 | 47.0 | 2.85e-01 | 100.0% | 11.3% |
| 3454914 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.61 | 47.0 | 3.78e-01 | 93.2% | 40.0% |
| 4865157 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.61 | 48.0 | 3.70e-01 | 95.5% | 40.5% |
| 3352475 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.61 | 45.0 | 3.99e-01 | 93.2% | 52.0% |
| 3599937 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 52.0 | 4.06e-01 | 100.0% | 49.0% |
| 2628859 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.60 | 49.0 | 3.63e-01 | 100.0% | 37.3% |
| 4146808 | 222.2.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins | 0.60 | 47.0 | 3.87e-01 | 100.0% | 67.0% |
| 3926989 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 45.0 | 2.83e-01 | 100.0% | 13.0% |
| 3676745 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.59 | 45.0 | 3.40e-01 | 97.7% | 30.7% |
| 3694008 | 6.1.1.10 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FRG1 | 0.59 | 44.0 | 3.02e-01 | 88.6% | 63.2% |
| 3506512 | 2.1.1.168 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C | 0.59 | 43.0 | 3.64e-01 | 95.5% | 43.3% |
| 4122961 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.58 | 40.0 | 3.30e-01 | 79.5% | 64.0% |
| 3805832 | 7516.1.1.41 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase | 0.58 | 43.0 | 2.64e-01 | 95.5% | 10.7% |
| 3683658 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.58 | 44.0 | 2.70e-01 | 97.7% | 11.9% |
| 3693249 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 43.0 | 3.35e-01 | 95.5% | 54.6% |
| 4946072 | 4010.1.1.1 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 | 0.58 | 49.0 | 3.05e-01 | 100.0% | 26.0% |
| 4068016 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.57 | 40.0 | 3.23e-01 | 79.5% | 61.0% |
| 3663874 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.57 | 42.0 | 2.60e-01 | 97.7% | 10.6% |
| 3696336 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 41.0 | 3.46e-01 | 100.0% | 41.1% |
| 3813872 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.56 | 43.0 | 2.72e-01 | 97.7% | 14.3% |
| 3164015 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 46.0 | 3.45e-01 | 100.0% | 92.8% |
| 1146570 | 243.15.1.1 ↗ | a+b two layers › Cystatin-like › Thermus phage P23-45 gp39 › Thermus phage P23-45 gp39 › P23-45_gp39_N | 0.55 | 43.0 | 3.29e-01 | 95.5% | 33.1% |
| 3995113 | 331.4.1.1 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 | 0.55 | 40.0 | 3.44e-01 | 93.2% | 44.2% |
| 4143581 | 9.2.1.8 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF27487 | 0.55 | 42.0 | 3.29e-01 | 93.2% | 51.7% |
| 4947486 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 41.0 | 3.05e-01 | 95.5% | 28.9% |
| 5055679 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 3.59e-01 | 88.6% | 55.7% |
| 3200499 | 109.21.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 | 0.54 | 39.0 | 2.31e-01 | 88.6% | 8.7% |
| 3297925 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 39.0 | 3.71e-01 | 93.2% | 65.0% |
| 4859328 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.53 | 38.0 | 2.89e-01 | 100.0% | 27.1% |
| 4020096 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.52 | 44.0 | 3.16e-01 | 100.0% | 90.0% |
| 4878467 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.52 | 37.0 | 3.17e-01 | 100.0% | 39.6% |
| 3743583 | 109.21.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 | 0.52 | 39.0 | 2.35e-01 | 93.2% | 98.0% |
| 3706357 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.51 | 39.0 | 2.67e-01 | 100.0% | 21.8% |
| 3958251 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 39.0 | 2.94e-01 | 100.0% | 55.2% |
| 3332026 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.51 | 40.0 | 2.74e-01 | 93.2% | 22.1% |
| 3721305 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.51 | 40.0 | 3.17e-01 | 93.2% | 55.3% |
| 3944564 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.51 | 41.0 | 2.28e-01 | 100.0% | 35.1% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.51 | 38.0 | 3.21e-01 | 97.7% | 43.0% |
D2
medium
residues 243-285
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01260__D197-240
D3
medium
residues 291-330
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01260__D197-240
CATH (67)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dlqA01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.74 | 60.0 | 5.31e-01 | 97.5% | 61.7% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.70 | 56.0 | 3.29e-01 | 100.0% | 11.5% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 58.0 | 4.72e-01 | 100.0% | 50.0% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.70 | 50.0 | 3.87e-01 | 80.0% | 34.1% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 55.0 | 3.66e-01 | 92.5% | 25.6% |
| 1ksiA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 49.0 | 3.80e-01 | 100.0% | 33.3% |
| 4fumA01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.68 | 59.0 | 4.86e-01 | 100.0% | 86.5% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.68 | 52.0 | 5.10e-01 | 100.0% | 81.8% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.68 | 53.0 | 3.31e-01 | 100.0% | 14.2% |
| 1mg2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 45.0 | 2.62e-01 | 90.0% | 7.3% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.66 | 51.0 | 4.49e-01 | 92.5% | 54.5% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.66 | 48.0 | 3.15e-01 | 95.0% | 17.7% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 45.0 | 2.64e-01 | 97.5% | 7.9% |
| 3mdqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 48.0 | 3.52e-01 | 100.0% | 27.6% |
| 1pguA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 52.0 | 3.12e-01 | 100.0% | 11.7% |
| 5o46A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 53.0 | 3.99e-01 | 100.0% | 51.8% |
| 4pswB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 53.0 | 3.16e-01 | 100.0% | 12.0% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 47.0 | 3.47e-01 | 100.0% | 28.3% |
| 3b7kB01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.64 | 51.0 | 3.65e-01 | 97.5% | 62.9% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.63 | 51.0 | 4.00e-01 | 100.0% | 43.1% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 49.0 | 3.34e-01 | 92.5% | 23.0% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 50.0 | 3.74e-01 | 97.5% | 75.2% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.62 | 47.0 | 2.76e-01 | 100.0% | 10.3% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 48.0 | 2.84e-01 | 100.0% | 21.9% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.61 | 46.0 | 2.92e-01 | 95.0% | 14.7% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 46.0 | 3.42e-01 | 97.5% | 28.9% |
| 6grrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 3.22e-01 | 92.5% | 29.7% |
| 7kx7A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 45.0 | 2.95e-01 | 95.0% | 17.2% |
| 2pzhA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 50.0 | 3.52e-01 | 97.5% | 32.1% |
| 2v1oB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 49.0 | 3.47e-01 | 100.0% | 48.6% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.60 | 48.0 | 3.55e-01 | 100.0% | 67.5% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.59 | 46.0 | 2.93e-01 | 95.0% | 15.4% |
| 2xliA01 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.59 | 41.0 | 2.83e-01 | 77.5% | 24.4% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 44.0 | 2.73e-01 | 100.0% | 12.1% |
| 1wnhA02 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 47.0 | 3.49e-01 | 100.0% | 34.2% |
| 1x31D00 | 3.30.2270.10 | Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily | 0.57 | 41.0 | 3.27e-01 | 92.5% | 35.2% |
| 2q2eB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 45.0 | 2.94e-01 | 100.0% | 19.5% |
| 3a0rA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 41.0 | 3.37e-01 | 97.5% | 38.7% |
| 4ku0D00 | 2.60.200.60 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 45.0 | 3.63e-01 | 100.0% | 45.8% |
| 6pzjA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 41.0 | 3.01e-01 | 92.5% | 27.7% |
| 2veaA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 3.11e-01 | 92.5% | 26.9% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 39.0 | 3.57e-01 | 87.5% | 49.3% |
| 1t71A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.56 | 43.0 | 2.73e-01 | 100.0% | 93.2% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.56 | 40.0 | 3.81e-01 | 90.0% | 60.7% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 46.0 | 3.63e-01 | 100.0% | 96.7% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 40.0 | 2.64e-01 | 97.5% | 15.8% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.55 | 41.0 | 2.62e-01 | 100.0% | 65.8% |
| 8in8C01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 41.0 | 2.65e-01 | 97.5% | 17.6% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 42.0 | 3.21e-01 | 87.5% | 61.8% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 44.0 | 3.43e-01 | 100.0% | 43.1% |
| 7z67A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 2.65e-01 | 90.0% | 25.7% |
| 4wrnA03 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.54 | 42.0 | 2.89e-01 | 95.0% | 29.9% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.54 | 39.0 | 3.02e-01 | 95.0% | 29.6% |
| 2gq0B01 | 3.30.230.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 44.0 | 3.01e-01 | 100.0% | 39.8% |
| 1vw4X00 | 2.20.28.120 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 | 0.53 | 38.0 | 3.49e-01 | 100.0% | 54.7% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 39.0 | 3.13e-01 | 100.0% | 73.9% |
| 1w97L01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 38.0 | 2.68e-01 | 97.5% | 22.1% |
| 3by9B01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 38.0 | 2.89e-01 | 92.5% | 29.0% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.32e-01 | 95.0% | 56.8% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 42.0 | 2.50e-01 | 100.0% | 38.7% |
| 3eo5A01 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.52 | 38.0 | 3.31e-01 | 100.0% | 70.5% |
| 1xxmC01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.52 | 42.0 | 3.53e-01 | 97.5% | 51.4% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.51 | 40.0 | 3.52e-01 | 100.0% | 66.2% |
| 1ddvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.09e-01 | 92.5% | 44.2% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 39.0 | 3.17e-01 | 90.0% | 42.5% |
| 2jr1A01 | 3.30.160.510 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS | 0.51 | 36.0 | 3.36e-01 | 87.5% | 59.4% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.32e-01 | 90.0% | 57.1% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784766 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.83 | 61.0 | 3.47e-01 | 97.5% | 8.3% |
| 4142339 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.79 | 67.0 | 4.64e-01 | 100.0% | 29.3% |
| 4929084 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.74 | 61.0 | 3.54e-01 | 97.5% | 17.0% |
| 3441598 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.73 | 56.0 | 3.34e-01 | 95.0% | 11.5% |
| 4478964 | 913.1.1.1 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › HRM | 0.70 | 58.0 | 5.09e-01 | 100.0% | 64.6% |
| 1841021 | 243.19.1.1 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › Gp34_2nd | 0.69 | 57.0 | 4.13e-01 | 95.0% | 33.9% |
| 2417913 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.69 | 57.0 | 3.29e-01 | 95.0% | 9.8% |
| 3607858 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 56.0 | 4.31e-01 | 100.0% | 40.0% |
| 4341158 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 55.0 | 3.77e-01 | 100.0% | 25.2% |
| 5007359 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.69 | 51.0 | 4.29e-01 | 92.5% | 47.1% |
| 4052385 | 2003.1.10.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Rimk_N | 0.68 | 56.0 | 4.15e-01 | 92.5% | 60.0% |
| 3670182 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.68 | 51.0 | 3.76e-01 | 92.5% | 28.8% |
| 3197575 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.68 | 52.0 | 4.05e-01 | 90.0% | 37.8% |
| 3962011 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.68 | 51.0 | 3.54e-01 | 92.5% | 24.3% |
| 3864913 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.66 | 54.0 | 3.71e-01 | 97.5% | 24.5% |
| 3927366 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.66 | 53.0 | 3.73e-01 | 100.0% | 26.0% |
| 4865228 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.66 | 51.0 | 4.09e-01 | 100.0% | 40.2% |
| 3740897 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.65 | 49.0 | 2.95e-01 | 95.0% | 10.4% |
| 399504 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.63 | 51.0 | 3.06e-01 | 97.5% | 12.1% |
| 3179468 | 330.1.1.18 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 | 0.62 | 53.0 | 3.61e-01 | 100.0% | 29.4% |
| None | — | 0.62 | 48.0 | 2.75e-01 | 100.0% | 9.5% | |
| 5010745 | 3781.2.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related › ThermoDBP-RP_arch | 0.62 | 50.0 | 3.77e-01 | 100.0% | 72.5% |
| 2549178 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.62 | 50.0 | 3.80e-01 | 100.0% | 36.3% |
| 3805832 | 7516.1.1.41 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase | 0.61 | 51.0 | 2.99e-01 | 100.0% | 11.2% |
| 2082805 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.61 | 50.0 | 3.97e-01 | 100.0% | 45.7% |
| 3863963 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.61 | 46.0 | 3.43e-01 | 92.5% | 64.8% |
| 4993562 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 49.0 | 3.79e-01 | 100.0% | 41.0% |
| 3205088 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 49.0 | 3.67e-01 | 100.0% | 34.2% |
| 4998035 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 45.0 | 4.27e-01 | 95.0% | 70.0% |
| 1725891 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.59 | 46.0 | 4.71e-01 | 100.0% | 94.9% |
| 3723171 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 45.0 | 3.20e-01 | 100.0% | 24.7% |
| 4946348 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.59 | 44.0 | 2.71e-01 | 90.0% | 12.5% |
| 3899291 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 3.66e-01 | 97.5% | 67.6% |
| 3993255 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 46.0 | 4.10e-01 | 95.0% | 92.3% |
| 3851160 | 5.1.5.61 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Frtz | 0.59 | 43.0 | 2.46e-01 | 95.0% | 6.5% |
| 4149046 | 243.3.1.60 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 | 0.58 | 42.0 | 3.60e-01 | 97.5% | 56.7% |
| 3257350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.29e-01 | 90.0% | 86.7% |
| 3466584 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 41.0 | 3.78e-01 | 92.5% | 55.4% |
| 3424666 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.57 | 45.0 | 2.76e-01 | 95.0% | 12.9% |
| 3928228 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.57 | 45.0 | 2.88e-01 | 95.0% | 16.2% |
| 3553885 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.57 | 47.0 | 3.39e-01 | 100.0% | 65.2% |
| 1177460 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.57 | 41.0 | 3.30e-01 | 100.0% | 35.6% |
| 3315173 | 243.3.1.46 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM | 0.57 | 43.0 | 3.29e-01 | 97.5% | 33.0% |
| 3506831 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.56 | 44.0 | 3.55e-01 | 95.0% | 43.8% |
| 4957167 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.56 | 45.0 | 2.89e-01 | 100.0% | 16.7% |
| 3669262 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.56 | 39.0 | 2.36e-01 | 87.5% | 8.3% |
| 4022907 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 43.0 | 3.50e-01 | 100.0% | 41.0% |
| 3678781 | 7516.1.1.41 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glucan_synthase | 0.56 | 42.0 | 2.36e-01 | 97.5% | 5.3% |
| 3452042 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.56 | 42.0 | 3.95e-01 | 92.5% | 81.8% |
| 7873 | 246.2.1.10 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › YmdB | 0.56 | 43.0 | 2.73e-01 | 100.0% | 93.2% |
| 3962549 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 41.0 | 3.00e-01 | 92.5% | 25.3% |
| 3274239 | 330.1.1.18 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 | 0.55 | 41.0 | 3.26e-01 | 100.0% | 36.5% |
| 4185962 | 2484.1.1.122 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF2209 | 0.55 | 45.0 | 3.29e-01 | 97.5% | 34.4% |
| 4269765 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.55 | 40.0 | 3.81e-01 | 90.0% | 65.5% |
| 3629019 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.55 | 43.0 | 3.06e-01 | 92.5% | 26.4% |
| 3797946 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 44.0 | 3.11e-01 | 92.5% | 26.4% |
| 3494653 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.55 | 41.0 | 2.86e-01 | 95.0% | 28.6% |
| 4370831 | 4010.1.1.3 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 | 0.54 | 40.0 | 2.57e-01 | 95.0% | 20.0% |
| 4938361 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 39.0 | 2.97e-01 | 97.5% | 27.1% |
| 3959120 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 39.0 | 3.37e-01 | 92.5% | 44.7% |
| 4945439 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 44.0 | 3.04e-01 | 97.5% | 26.2% |
| 5018492 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.53 | 38.0 | 3.02e-01 | 100.0% | 33.6% |
| 3994778 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 2.96e-01 | 97.5% | 25.9% |
| 3060581 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.52 | 39.0 | 3.71e-01 | 100.0% | 69.6% |
| 4932428 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.51 | 39.0 | 3.50e-01 | 100.0% | 57.1% |
| 3389979 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 42.0 | 3.14e-01 | 100.0% | 34.2% |