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S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01274

Bact-Vir

S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01274

Identity

Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-116
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.83 49.0 5.80e-01 100.0% 85.5%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 67.0 6.33e-01 99.1% 78.1%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 63.0 6.40e-01 100.0% 91.7%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 60.0 5.93e-01 100.0% 82.5%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.73 63.0 6.41e-01 100.0% 94.5%
4lmiB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 63.0 5.83e-01 100.0% 75.7%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 60.0 6.03e-01 99.1% 88.3%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 63.0 5.75e-01 100.0% 73.8%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 65.0 6.03e-01 100.0% 86.0%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 64.0 5.65e-01 100.0% 91.2%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 64.0 5.58e-01 100.0% 74.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 61.0 6.14e-01 100.0% 94.5%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 64.0 6.15e-01 100.0% 95.1%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.69 45.0 4.94e-01 100.0% 82.8%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 61.0 6.07e-01 100.0% 92.9%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 61.0 5.89e-01 99.1% 96.0%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 62.0 5.99e-01 99.1% 95.9%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 62.0 5.57e-01 100.0% 88.5%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.67 61.0 5.12e-01 99.1% 76.5%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 56.0 5.81e-01 99.1% 95.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 61.0 5.92e-01 100.0% 90.8%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 62.0 5.83e-01 100.0% 87.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 60.0 5.87e-01 100.0% 97.5%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 60.0 5.72e-01 100.0% 89.1%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 43.0 4.72e-01 100.0% 82.8%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 60.0 5.70e-01 100.0% 89.8%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 35.0 4.32e-01 96.4% 86.4%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 55.0 5.54e-01 100.0% 95.4%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 42.0 4.76e-01 100.0% 94.9%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.63 38.0 3.48e-01 100.0% 45.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.63 54.0 5.20e-01 99.1% 82.9%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 4.93e-01 100.0% 93.7%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.61 38.0 4.23e-01 90.9% 81.7%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.61 39.0 4.25e-01 100.0% 78.9%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 4.37e-01 100.0% 77.5%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.93e-01 100.0% 60.0%
3pgbA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 4.28e-01 100.0% 74.8%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.56 37.0 3.84e-01 98.2% 72.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.55 39.0 2.81e-01 100.0% 24.9%
1w7cA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 4.21e-01 100.0% 78.6%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 27.0 3.10e-01 99.1% 61.3%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 35.0 3.23e-01 99.1% 49.0%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 38.0 2.90e-01 91.8% 32.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 34.0 2.83e-01 99.1% 40.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4104010 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.91 74.0 7.97e-01 95.5% 97.9%
4929919 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.81 65.0 6.95e-01 99.1% 97.9%
4949878 243.1.1.23 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 0.80 70.0 7.04e-01 100.0% 93.6%
4119121 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.78 63.0 6.59e-01 99.1% 93.9%
1316603 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.78 71.0 5.66e-01 99.1% 71.4%
5002369 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.77 72.0 7.15e-01 100.0% 94.8%
3288112 243.1.1.69 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.77 68.0 6.84e-01 100.0% 95.4%
4623792 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.75 64.0 6.14e-01 99.1% 80.0%
4436162 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.75 61.0 5.78e-01 99.1% 73.1%
4025923 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.74 49.0 5.59e-01 100.0% 92.5%
4930408 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.73 62.0 6.46e-01 96.4% 99.0%
3925989 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.73 67.0 6.45e-01 100.0% 92.0%
1316604 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.73 66.0 5.65e-01 99.1% 83.9%
3284889 243.1.1.76 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF25976 0.73 65.0 6.30e-01 99.1% 86.7%
1278471 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.72 63.0 6.29e-01 100.0% 92.1%
4949068 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.72 64.0 6.42e-01 99.1% 95.5%
4929282 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 45.0 5.31e-01 100.0% 93.3%
4032717 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.71 43.0 5.18e-01 100.0% 91.8%
4204257 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.71 64.0 6.05e-01 99.1% 84.2%
169506 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.71 60.0 6.02e-01 99.1% 87.5%
3624756 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.71 53.0 5.47e-01 99.1% 82.7%
3976580 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.70 65.0 5.79e-01 100.0% 78.4%
3524576 1073.1.1.0 alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) 0.70 47.0 4.28e-01 100.0% 51.7%
4648747 243.3.1.8 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3889 0.70 46.0 5.40e-01 100.0% 97.3%
3216577 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.70 61.0 6.13e-01 100.0% 93.8%
184879 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.70 64.0 5.37e-01 99.1% 77.7%
1146735 243.1.1.29 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4783 0.69 61.0 6.14e-01 100.0% 94.5%
3727055 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.69 63.0 5.73e-01 100.0% 86.2%
3587998 243.1.1.102 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28180 0.69 59.0 6.10e-01 100.0% 97.1%
3948116 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.69 63.0 5.87e-01 99.1% 83.7%
2605238 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.69 59.0 6.01e-01 100.0% 95.3%
1948932 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.68 58.0 5.99e-01 100.0% 95.3%
3277629 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 61.0 5.91e-01 99.1% 98.4%
3386770 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.67 60.0 5.25e-01 98.2% 80.6%
3286818 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 59.0 5.63e-01 98.2% 100.0%
358014 243.1.1.22 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.67 61.0 5.92e-01 100.0% 90.8%
3742459 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.67 49.0 5.15e-01 94.5% 85.0%
3962383 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.66 60.0 5.78e-01 100.0% 86.4%
3221974 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 56.0 5.72e-01 100.0% 96.2%
4926997 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.66 57.0 5.83e-01 99.1% 97.1%
5052916 243.1.1.22 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.66 60.0 5.68e-01 100.0% 86.2%
4983588 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 35.0 4.14e-01 100.0% 76.0%
5071733 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.65 42.0 4.60e-01 94.5% 80.0%
3287996 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.65 53.0 5.44e-01 100.0% 95.2%
4096980 243.5.1.6 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cyto_heme_lyase 0.62 50.0 4.79e-01 99.1% 73.8%
3271321 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 55.0 5.17e-01 98.2% 81.5%
4028122 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 42.0 3.70e-01 98.2% 45.9%
4321871 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.60 42.0 4.29e-01 100.0% 73.6%
3451758 243.5.1.1 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.57 43.0 4.47e-01 100.0% 84.8%
3807375 109.4.1.1306 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11 0.57 43.0 3.13e-01 81.8% 50.8%
3449021 109.4.1.1734 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_11 0.56 43.0 3.09e-01 80.9% 51.5%
3905709 243.3.1.22 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cyto_heme_lyase 0.56 51.0 4.29e-01 100.0% 63.3%
4972327 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.55 42.0 4.50e-01 96.4% 95.8%
3968293 71.2.1.3 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › DUF3108 0.54 40.0 3.28e-01 78.2% 89.5%
3393657 243.3.1.35 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.54 41.0 3.99e-01 100.0% 72.8%
3969497 3222.1.1.0 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase 0.53 47.0 3.48e-01 100.0% 69.5%
4166318 3222.1.1.1 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.53 48.0 3.49e-01 100.0% 67.9%
3659427 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.53 44.0 3.04e-01 91.8% 41.8%
4504902 3222.1.1.1 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.52 47.0 3.41e-01 100.0% 69.2%
3407434 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.52 46.0 3.13e-01 99.1% 30.4%
4356238 3222.1.1.1 a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.51 46.0 3.37e-01 100.0% 68.9%
4662134 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 38.0 3.79e-01 95.5% 75.7%