←Back to structures
S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01277
Bact-VirS2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01277
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-122
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00385__D23-124
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6wimA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.77 | 55.0 | 3.62e-01 | 73.2% | 33.3% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.71 | 49.0 | 4.20e-01 | 70.1% | 51.7% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.71 | 45.0 | 3.90e-01 | 90.7% | 43.1% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.69 | 50.0 | 3.71e-01 | 76.3% | 34.7% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 36.0 | 4.45e-01 | 85.6% | 85.0% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.67 | 40.0 | 3.44e-01 | 81.4% | 39.0% |
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 39.0 | 3.71e-01 | 93.8% | 50.0% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.65 | 50.0 | 3.41e-01 | 82.5% | 48.2% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 40.0 | 3.60e-01 | 80.4% | 45.1% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.65 | 37.0 | 4.74e-01 | 87.6% | 98.2% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 48.0 | 3.29e-01 | 83.5% | 89.3% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.61 | 48.0 | 3.89e-01 | 90.7% | 45.1% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.60 | 53.0 | 3.68e-01 | 99.0% | 97.1% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.59 | 53.0 | 3.93e-01 | 100.0% | 44.7% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 33.0 | 3.51e-01 | 70.1% | 59.6% |
| 3wlvA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.59 | 44.0 | 3.11e-01 | 78.4% | 83.2% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 39.0 | 3.49e-01 | 88.7% | 48.1% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 49.0 | 3.73e-01 | 99.0% | 49.0% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 43.0 | 3.80e-01 | 84.5% | 84.0% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.54 | 44.0 | 3.94e-01 | 88.7% | 69.3% |
| 6obtA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.54 | 44.0 | 3.16e-01 | 85.6% | 73.9% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 2.92e-01 | 84.5% | 43.1% |
| 1u17A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 47.0 | 3.82e-01 | 100.0% | 65.4% |
| 4lb8A02 | 2.60.40.3900 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 46.0 | 4.15e-01 | 100.0% | 86.9% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 40.0 | 3.59e-01 | 84.5% | 88.4% |
| 4ckbD02 | 3.20.100.20 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › | 0.50 | 37.0 | 2.93e-01 | 78.4% | 62.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3913260 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.74 | 56.0 | 4.41e-01 | 79.4% | 58.4% |
| 4466226 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.73 | 55.0 | 5.37e-01 | 79.4% | 89.5% |
| 3966459 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.71 | 45.0 | 3.93e-01 | 90.7% | 44.3% |
| 4254174 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.70 | 49.0 | 4.22e-01 | 71.1% | 51.0% |
| 3303563 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.69 | 46.0 | 3.88e-01 | 94.8% | 41.2% |
| 4668983 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.69 | 49.0 | 4.14e-01 | 74.2% | 72.5% |
| 3820010 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.69 | 46.0 | 3.85e-01 | 94.8% | 41.2% |
| 2410020 | 881.1.1.4 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB | 0.68 | 46.0 | 3.96e-01 | 94.8% | 45.3% |
| 3167349 | 881.5.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Respiratory growth induced protein 1 › Respiratory growth induced protein 1 › RGI1 | 0.68 | 39.0 | 3.40e-01 | 80.4% | 37.3% |
| 4597964 | 881.5.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Respiratory growth induced protein 1 › Respiratory growth induced protein 1 | 0.68 | 39.0 | 3.40e-01 | 80.4% | 37.3% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.67 | 47.0 | 5.15e-01 | 94.8% | 88.7% |
| 5034702 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.67 | 43.0 | 3.72e-01 | 91.8% | 42.3% |
| 4162922 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.66 | 48.0 | 3.40e-01 | 76.3% | 42.6% |
| 3489236 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.66 | 45.0 | 4.42e-01 | 70.1% | 70.5% |
| 3477707 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.65 | 47.0 | 3.87e-01 | 75.3% | 54.3% |
| 3508903 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.65 | 44.0 | 4.35e-01 | 70.1% | 70.5% |
| 3921483 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.64 | 46.0 | 3.29e-01 | 75.3% | 27.8% |
| 5013876 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.64 | 37.0 | 2.74e-01 | 85.6% | 22.9% |
| 3924297 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.63 | 43.0 | 4.31e-01 | 70.1% | 71.0% |
| 3964119 | 5084.5.3.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel | 0.63 | 53.0 | 3.59e-01 | 93.8% | 54.3% |
| None | — | 0.62 | 39.0 | 3.62e-01 | 84.5% | 50.4% | |
| 4181051 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.61 | 52.0 | 3.36e-01 | 94.8% | 28.0% |
| 3421524 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 52.0 | 3.54e-01 | 100.0% | 68.8% |
| 3403847 | 9.1.1.47 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 | 0.60 | 49.0 | 5.06e-01 | 94.8% | 96.7% |
| 3258590 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.58 | 51.0 | 5.15e-01 | 100.0% | 95.8% |
| 4022543 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.57 | 44.0 | 3.40e-01 | 83.5% | 84.3% |
| 3177497 | 844.1.1.4 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase | 0.57 | 47.0 | 3.61e-01 | 91.8% | 69.2% |
| 3636802 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.56 | 38.0 | 3.90e-01 | 70.1% | 86.3% |
| 3491456 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.56 | 42.0 | 3.65e-01 | 79.4% | 76.7% |
| 3638672 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 48.0 | 4.15e-01 | 93.8% | 73.2% |
| 5049570 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 38.0 | 2.83e-01 | 70.1% | 79.6% |
| 3282454 | 222.1.1.24 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA | 0.55 | 38.0 | 3.28e-01 | 70.1% | 79.3% |
| 2362 | 71.2.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind | 0.55 | 45.0 | 3.67e-01 | 90.7% | 94.6% |
| 3989339 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.53 | 44.0 | 3.24e-01 | 92.8% | 59.6% |
| 3604240 | 71.1.1.25 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF6612 | 0.53 | 47.0 | 3.69e-01 | 100.0% | 84.3% |
| 3243813 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.52 | 46.0 | 4.26e-01 | 94.8% | 83.3% |
| 3500606 | 868.1.1.3 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 | 0.52 | 43.0 | 3.60e-01 | 93.8% | 87.6% |
| 3496817 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.52 | 46.0 | 3.93e-01 | 99.0% | 91.9% |
| 5036054 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 40.0 | 2.63e-01 | 84.5% | 30.3% |
| 5010985 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.51 | 47.0 | 3.31e-01 | 100.0% | 74.5% |
| 4998370 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.50 | 40.0 | 3.03e-01 | 86.6% | 39.2% |