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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00066
Bact-VirS2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00066
Identity
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-122
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 36.0 | 3.36e-01 | 88.5% | 45.9% |
| 6fexA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 33.0 | 3.63e-01 | 99.2% | 81.8% |
| 1dwnA00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 35.0 | 3.52e-01 | 88.5% | 68.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4093588 | 4194.1.1.2 ↗ | a+b duplicates or obligate multimers › Prenyltransferase-like › Prenyltransferase-like › Prenyltransferase-like › Trp_DMAT | 0.73 | 67.0 | 4.48e-01 | 98.4% | 51.1% |
| 5023339 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.55 | 31.0 | 4.01e-01 | 93.4% | 98.6% |
| 3611678 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.52 | 42.0 | 3.80e-01 | 88.5% | 91.8% |
| 3598422 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 39.0 | 4.29e-01 | 93.4% | 100.0% |
| 3714318 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 39.0 | 3.86e-01 | 80.3% | 99.2% |
| 4934107 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.51 | 33.0 | 3.08e-01 | 87.7% | 51.6% |
| 3186853 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.51 | 37.0 | 3.18e-01 | 100.0% | 47.9% |
| 3279281 | 244.1.1.9 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C | 0.51 | 41.0 | 3.51e-01 | 87.7% | 80.5% |
D2
medium
residues 123-218
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.69 | 40.0 | 4.28e-01 | 89.6% | 65.5% |
| 2qh9A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.63 | 31.0 | 2.48e-01 | 92.7% | 24.7% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 42.0 | 4.48e-01 | 92.7% | 82.7% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 34.0 | 3.57e-01 | 95.8% | 61.1% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 34.0 | 3.55e-01 | 94.8% | 63.5% |
| 3rgaA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 4.11e-01 | 96.9% | 94.6% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.54 | 48.0 | 3.87e-01 | 99.0% | 84.3% |
| 3loyA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 46.0 | 4.60e-01 | 96.9% | 92.1% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 26.0 | 3.03e-01 | 76.0% | 64.2% |
| 3gm8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.18e-01 | 77.1% | 57.1% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 43.0 | 3.80e-01 | 90.6% | 93.4% |
| 2ecfA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.51 | 46.0 | 2.97e-01 | 100.0% | 33.9% |
| 1jmoA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 44.0 | 3.78e-01 | 95.8% | 99.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611446 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 52.0 | 3.66e-01 | 97.9% | 55.4% |
| 3592050 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 45.0 | 3.97e-01 | 82.3% | 100.0% |
| 5009565 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 41.0 | 3.74e-01 | 82.3% | 55.4% |
| 3224729 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 39.0 | 4.01e-01 | 71.9% | 95.8% |
| 3415137 | 5.1.4.394 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B | 0.56 | 48.0 | 2.99e-01 | 93.8% | 24.2% |
| 3467489 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.55 | 44.0 | 3.58e-01 | 85.4% | 56.1% |
| 5042072 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 39.0 | 3.55e-01 | 74.0% | 91.5% |
| 3425035 | 243.1.1.122 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28340 | 0.54 | 46.0 | 4.64e-01 | 92.7% | 100.0% |
| 3340221 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.14e-01 | 100.0% | 41.5% |
| 3311783 | 5.1.5.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 | 0.53 | 47.0 | 3.04e-01 | 99.0% | 37.0% |
| 3718120 | 246.2.1.8 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PhoD | 0.53 | 46.0 | 3.04e-01 | 100.0% | 95.7% |
| 3565624 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 47.0 | 3.18e-01 | 100.0% | 39.2% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.52 | 40.0 | 4.10e-01 | 83.3% | 97.9% |
| 3459363 | 243.3.1.74 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 | 0.52 | 41.0 | 4.35e-01 | 83.3% | 94.1% |
| 3705068 | 5.1.4.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 | 0.52 | 46.0 | 2.92e-01 | 96.9% | 35.2% |
| 3169639 | 5.1.4.179 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 | 0.52 | 47.0 | 3.08e-01 | 99.0% | 30.9% |
| None | — | 0.52 | 45.0 | 3.20e-01 | 96.9% | 31.7% | |
| 3517509 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 44.0 | 4.26e-01 | 94.8% | 95.5% |
| 3810779 | 243.3.1.45 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › TIN1 | 0.51 | 40.0 | 3.97e-01 | 86.5% | 99.0% |
| 3180217 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.51 | 35.0 | 3.30e-01 | 70.8% | 80.8% |
| 3191963 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 40.0 | 2.53e-01 | 86.5% | 53.7% |
| 3816629 | 804.1.1.3 ↗ | a+b four layers › Hypothetical protein YwqG › Hypothetical protein YwqG › Hypothetical protein YwqG › PDCD2_C, PF30657 | 0.51 | 45.0 | 3.38e-01 | 99.0% | 98.3% |