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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00085
Bact-VirS2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00085
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-42_77-150
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_407201_prodigal-single.1__X__X__00182__D12-123
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i1jB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 44.0 | 4.53e-01 | 100.0% | 63.5% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 40.0 | 4.77e-01 | 100.0% | 92.5% |
| 4cc2A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 38.0 | 4.61e-01 | 100.0% | 93.7% |
| 6j5cA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.63 | 34.0 | 3.77e-01 | 100.0% | 66.3% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.62 | 38.0 | 4.42e-01 | 100.0% | 85.5% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 32.0 | 3.84e-01 | 100.0% | 79.4% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.59 | 40.0 | 4.32e-01 | 100.0% | 83.3% |
| 1ojqA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.54 | 40.0 | 3.15e-01 | 77.4% | 39.6% |
| 1gzeA00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.53 | 40.0 | 3.19e-01 | 78.3% | 40.1% |
| 6k93A00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.53 | 38.0 | 2.99e-01 | 76.4% | 33.5% |
| 1mo9A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 33.0 | 3.11e-01 | 95.3% | 49.6% |
| 3p2hA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.51e-01 | 87.7% | 56.0% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 36.0 | 3.30e-01 | 100.0% | 55.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987601 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 38.0 | 5.41e-01 | 98.1% | 98.0% |
| 3512902 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.76 | 37.0 | 5.05e-01 | 99.1% | 90.9% |
| 3612090 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 40.0 | 5.14e-01 | 100.0% | 91.7% |
| 3842361 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.72 | 48.0 | 5.08e-01 | 100.0% | 75.8% |
| 3505589 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.72 | 37.0 | 3.58e-01 | 100.0% | 44.2% |
| 3530890 | 2004.1.1.402 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT | 0.70 | 48.0 | 5.21e-01 | 99.1% | 84.1% |
| 3505711 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.70 | 37.0 | 4.08e-01 | 100.0% | 63.5% |
| 3259841 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 42.0 | 5.03e-01 | 100.0% | 92.9% |
| 3519380 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.66 | 41.0 | 4.62e-01 | 100.0% | 82.5% |
| 5025280 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.65 | 38.0 | 4.16e-01 | 100.0% | 70.0% |
| 3174580 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 37.0 | 4.10e-01 | 100.0% | 75.3% |
| 3213653 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 40.0 | 4.46e-01 | 100.0% | 92.5% |
| 3249352 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.56 | 40.0 | 3.81e-01 | 100.0% | 60.8% |
| 3788630 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.56 | 42.0 | 3.89e-01 | 100.0% | 61.5% |
| 3639466 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.56 | 40.0 | 3.63e-01 | 100.0% | 54.5% |
| 4028378 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.56 | 40.0 | 3.80e-01 | 100.0% | 61.5% |
| 5043209 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.55 | 39.0 | 3.52e-01 | 94.3% | 52.0% |
| 157262 | 237.1.1.8 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox | 0.53 | 40.0 | 3.20e-01 | 78.3% | 39.9% |
| 3716086 | 10.12.1.62 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_cat | 0.50 | 37.0 | 2.87e-01 | 78.3% | 48.0% |
| 4932882 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.50 | 37.0 | 3.48e-01 | 100.0% | 62.2% |