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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00140
Bact-VirS2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00140
Identity
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-154
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.76 | 37.0 | 4.63e-01 | 78.5% | 75.6% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.76 | 36.0 | 4.54e-01 | 78.5% | 73.1% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 40.0 | 4.36e-01 | 73.8% | 72.1% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 39.0 | 4.57e-01 | 83.9% | 87.4% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 36.0 | 4.09e-01 | 70.5% | 77.5% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 33.0 | 4.08e-01 | 75.8% | 88.0% |
| 2c9aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 33.0 | 3.95e-01 | 89.9% | 88.7% |
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 26.0 | 3.32e-01 | 79.9% | 80.9% |
| 2w8eA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.51 | 45.0 | 4.10e-01 | 97.3% | 81.8% |
| 1tulA00 | 2.70.40.20 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Baculovirus telokin-like protein 20 | 0.50 | 31.0 | 3.53e-01 | 85.9% | 86.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963908 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.69 | 31.0 | 4.35e-01 | 72.5% | 87.1% |
| 5000763 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 42.0 | 5.29e-01 | 78.5% | 100.0% |
| 4316037 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.67 | 37.0 | 4.26e-01 | 73.8% | 72.7% |
| 3561733 | 5.1.3.253 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CATSPERB_head | 0.65 | 40.0 | 4.98e-01 | 80.5% | 100.0% |
| 3850571 | 1.1.7.114 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CATSPERB_head | 0.64 | 39.0 | 4.87e-01 | 81.9% | 98.9% |
| 4942630 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 40.0 | 4.79e-01 | 85.2% | 95.0% |
| 3252482 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.63 | 38.0 | 4.65e-01 | 87.9% | 93.7% |
| 3250946 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 38.0 | 4.62e-01 | 92.6% | 96.8% |
| 3276842 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 39.0 | 4.23e-01 | 92.6% | 80.8% |
| 3563152 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.58 | 37.0 | 4.31e-01 | 91.3% | 90.5% |
| 3761126 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.58 | 35.0 | 4.12e-01 | 89.9% | 87.0% |
| 4371063 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 37.0 | 4.32e-01 | 88.6% | 94.0% |
| 2771876 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.58 | 31.0 | 3.45e-01 | 77.2% | 65.5% |
| 3625411 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 4.47e-01 | 92.6% | 92.2% |
| 5002657 | 12.1.1.114 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 | 0.57 | 33.0 | 4.15e-01 | 79.2% | 97.6% |
| 3552412 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.57 | 35.0 | 4.04e-01 | 89.9% | 87.0% |
| 4929978 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.57 | 31.0 | 3.67e-01 | 78.5% | 76.0% |
| 4427431 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.57 | 26.0 | 3.54e-01 | 74.5% | 82.7% |
| 4970326 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 33.0 | 3.96e-01 | 78.5% | 86.3% |
| 3517676 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 43.0 | 4.77e-01 | 83.9% | 96.7% |
| 3861216 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.55 | 34.0 | 3.97e-01 | 91.9% | 89.0% |
| 4981225 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 35.0 | 4.06e-01 | 91.9% | 91.4% |
| 3342201 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.54 | 32.0 | 3.67e-01 | 90.6% | 77.4% |
| 4059476 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 36.0 | 3.98e-01 | 91.3% | 85.0% |
| 3926311 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 28.0 | 3.15e-01 | 73.8% | 65.5% |
| 3718208 | 1.1.7.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ala_racemase_C | 0.52 | 44.0 | 4.43e-01 | 89.3% | 91.2% |
| 4944074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 4.01e-01 | 91.3% | 96.4% |
| 4044550 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.51 | 24.0 | 3.13e-01 | 75.2% | 80.0% |
| 5034098 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 28.0 | 3.24e-01 | 81.9% | 74.3% |
| 2792148 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.50 | 31.0 | 3.48e-01 | 80.5% | 79.6% |
| 418523 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.50 | 31.0 | 3.46e-01 | 78.5% | 79.8% |
D2
high
residues 281-349
Domain cluster:
rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00468__D116-186
CATH (66)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hsqA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.75 | 67.0 | 5.24e-01 | 100.0% | 59.0% |
| 3b34A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.72 | 60.0 | 4.41e-01 | 100.0% | 35.0% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 62.0 | 4.79e-01 | 100.0% | 57.3% |
| 6ea2A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.70 | 63.0 | 4.57e-01 | 100.0% | 37.4% |
| 4wz9A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.70 | 62.0 | 4.39e-01 | 100.0% | 35.0% |
| 2woyA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 61.0 | 4.74e-01 | 100.0% | 62.7% |
| 5nn3A05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.69 | 59.0 | 4.77e-01 | 94.2% | 53.8% |
| 4fe9A01 | 2.60.40.3640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 62.0 | 5.14e-01 | 100.0% | 78.3% |
| 5e7gA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 60.0 | 5.47e-01 | 95.7% | 90.0% |
| 5i0dA05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.69 | 61.0 | 4.87e-01 | 100.0% | 56.1% |
| 5zi7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.68 | 60.0 | 4.42e-01 | 100.0% | 37.8% |
| 5ylyA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 58.0 | 5.03e-01 | 100.0% | 94.6% |
| 4madA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.67 | 55.0 | 4.44e-01 | 100.0% | 47.0% |
| 8begA03 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 57.0 | 4.52e-01 | 100.0% | 65.1% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 57.0 | 4.46e-01 | 100.0% | 63.2% |
| 4aw7A03 | 2.60.120.1200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 58.0 | 4.84e-01 | 100.0% | 70.5% |
| 5e7gA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 55.0 | 5.23e-01 | 95.7% | 88.1% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 56.0 | 4.95e-01 | 100.0% | 97.1% |
| 4dk0A02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.64 | 56.0 | 5.16e-01 | 100.0% | 98.9% |
| 7ehgC01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 56.0 | 4.58e-01 | 98.6% | 100.0% |
| 3d3aA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 53.0 | 4.29e-01 | 100.0% | 47.0% |
| 6lebA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 56.0 | 4.51e-01 | 100.0% | 67.6% |
| 6ec6A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 55.0 | 4.12e-01 | 100.0% | 91.8% |
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 55.0 | 5.06e-01 | 100.0% | 95.6% |
| 1rcqA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.63 | 54.0 | 4.31e-01 | 100.0% | 75.3% |
| 3wnoA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 55.0 | 4.51e-01 | 100.0% | 65.4% |
| 1whxA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 46.0 | 3.98e-01 | 79.7% | 55.9% |
| 3d3aA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 50.0 | 3.84e-01 | 100.0% | 36.2% |
| 1n67A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 53.0 | 4.32e-01 | 100.0% | 56.0% |
| 4ay0B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 53.0 | 5.05e-01 | 100.0% | 82.9% |
| 6mvfA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 54.0 | 4.29e-01 | 100.0% | 47.3% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.62 | 53.0 | 4.69e-01 | 100.0% | 90.5% |
| 4mbrA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 52.0 | 4.20e-01 | 100.0% | 53.3% |
| 7cymA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.62 | 52.0 | 4.72e-01 | 97.1% | 82.5% |
| 3au0A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 52.0 | 4.20e-01 | 100.0% | 58.4% |
| 2w3jA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 53.0 | 4.34e-01 | 100.0% | 59.1% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 52.0 | 4.74e-01 | 98.6% | 77.6% |
| 4mboA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 51.0 | 4.15e-01 | 100.0% | 53.0% |
| 3fn9C04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 52.0 | 4.83e-01 | 98.6% | 73.9% |
| 4devD01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 52.0 | 4.38e-01 | 100.0% | 56.0% |
| 2wngA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 52.0 | 4.58e-01 | 100.0% | 80.4% |
| 4je0B01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 50.0 | 4.04e-01 | 100.0% | 55.3% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 4.15e-01 | 100.0% | 73.0% |
| 3irpX01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 49.0 | 4.01e-01 | 100.0% | 55.3% |
| 2qtsA02 | 2.60.470.10 | Mainly Beta › Sandwich › Acid-sensing ion channels like fold › Acid-sensing ion channels like domains | 0.59 | 45.0 | 3.50e-01 | 87.0% | 40.4% |
| 5jipA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 4.67e-01 | 100.0% | 80.0% |
| 3vynA01 | 2.60.40.3780 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 50.0 | 4.70e-01 | 98.6% | 78.2% |
| 4jklA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 49.0 | 3.79e-01 | 100.0% | 93.9% |
| 3ubfA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.58 | 49.0 | 4.41e-01 | 98.6% | 76.5% |
| 3p3yA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 50.0 | 4.52e-01 | 100.0% | 82.0% |
| 1hnfA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 4.35e-01 | 100.0% | 75.9% |
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.58 | 48.0 | 3.68e-01 | 100.0% | 89.9% |
| 3wy2A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 40.0 | 3.99e-01 | 100.0% | 71.2% |
| 5eqxA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.58 | 48.0 | 4.33e-01 | 98.6% | 82.2% |
| 6a2bB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 4.44e-01 | 98.6% | 86.2% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 50.0 | 4.36e-01 | 98.6% | 67.0% |
| 3abzA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 49.0 | 3.78e-01 | 100.0% | 45.5% |
| 5i8dA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.56 | 47.0 | 4.12e-01 | 98.6% | 72.3% |
| 4cvuA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 48.0 | 3.54e-01 | 100.0% | 94.5% |
| 1v7wA02 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.56 | 44.0 | 4.13e-01 | 98.6% | 70.2% |
| 6qdiA02 | 3.90.182.10 | Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 | 0.56 | 47.0 | 3.83e-01 | 100.0% | 48.9% |
| 3t5xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 4.02e-01 | 78.3% | 90.3% |
| 4ympA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 3.82e-01 | 92.8% | 75.0% |
| 3qugA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 3.77e-01 | 95.7% | 64.6% |
| 3thpA02 | 2.60.120.1520 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.50e-01 | 100.0% | 73.7% |
| 4apmA01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.50 | 37.0 | 3.29e-01 | 79.7% | 63.1% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3580349 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 71.0 | 6.32e-01 | 100.0% | 90.5% |
| 4944779 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.74 | 66.0 | 4.75e-01 | 100.0% | 40.0% |
| 5079573 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.73 | 64.0 | 4.96e-01 | 100.0% | 56.8% |
| 4238113 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.73 | 63.0 | 4.55e-01 | 100.0% | 33.2% |
| 3738652 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.73 | 64.0 | 5.09e-01 | 97.1% | 57.0% |
| 3737570 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.72 | 65.0 | 4.49e-01 | 100.0% | 44.0% |
| 4984453 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.72 | 63.0 | 4.55e-01 | 100.0% | 34.4% |
| 3562716 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.72 | 60.0 | 4.69e-01 | 89.9% | 55.0% |
| 3172237 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.72 | 64.0 | 4.47e-01 | 100.0% | 36.4% |
| 3959701 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.72 | 58.0 | 4.46e-01 | 100.0% | 38.7% |
| 3491854 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.71 | 61.0 | 4.45e-01 | 100.0% | 34.4% |
| 3507217 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.71 | 63.0 | 4.96e-01 | 100.0% | 52.4% |
| 3937771 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.71 | 63.0 | 4.45e-01 | 100.0% | 36.2% |
| 5027244 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.70 | 56.0 | 5.90e-01 | 97.1% | 98.3% |
| 3587122 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.70 | 61.0 | 4.96e-01 | 100.0% | 56.3% |
| 4934607 | 4081.1.1.7 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I | 0.70 | 61.0 | 4.65e-01 | 100.0% | 43.0% |
| 4958191 | 12.2.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain | 0.69 | 57.0 | 4.76e-01 | 100.0% | 51.6% |
| 3183322 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.69 | 60.0 | 4.26e-01 | 100.0% | 36.0% |
| 3933470 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.69 | 59.0 | 4.25e-01 | 100.0% | 35.8% |
| 2095620 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.69 | 59.0 | 4.71e-01 | 94.2% | 53.4% |
| 3194915 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.69 | 61.0 | 4.26e-01 | 100.0% | 35.6% |
| 3649785 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.68 | 59.0 | 4.28e-01 | 100.0% | 33.3% |
| 3623588 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.68 | 58.0 | 4.61e-01 | 97.1% | 57.2% |
| 4444672 | 11.1.5.89 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF3707 | 0.68 | 60.0 | 4.60e-01 | 100.0% | 57.5% |
| 3885267 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.67 | 59.0 | 4.72e-01 | 100.0% | 56.5% |
| 3696088 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.67 | 55.0 | 4.43e-01 | 92.8% | 55.0% |
| 3276497 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.67 | 58.0 | 5.37e-01 | 98.6% | 85.6% |
| 4939964 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 59.0 | 5.52e-01 | 98.6% | 84.7% |
| 5082829 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 53.0 | 5.22e-01 | 100.0% | 81.3% |
| 2387805 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.66 | 58.0 | 5.10e-01 | 100.0% | 74.3% |
| 3253959 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.66 | 59.0 | 4.45e-01 | 100.0% | 42.4% |
| 3589760 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 52.0 | 4.11e-01 | 98.6% | 39.4% |
| 3265702 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.65 | 58.0 | 5.25e-01 | 100.0% | 76.8% |
| 3720515 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 56.0 | 5.16e-01 | 100.0% | 96.7% |
| 3264616 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.64 | 56.0 | 5.05e-01 | 98.6% | 88.4% |
| 3266589 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 55.0 | 4.85e-01 | 98.6% | 77.1% |
| 4305507 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.64 | 53.0 | 4.72e-01 | 100.0% | 70.9% |
| 4978198 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 54.0 | 4.94e-01 | 98.6% | 81.1% |
| 3705413 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 54.0 | 4.93e-01 | 98.6% | 93.7% |
| 3877700 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.62 | 52.0 | 4.51e-01 | 98.6% | 73.0% |
| 3931539 | 10.32.1.88 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_2_N2 | 0.62 | 53.0 | 3.93e-01 | 100.0% | 38.5% |
| 3276891 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.62 | 54.0 | 4.43e-01 | 100.0% | 56.9% |
| 4271399 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.62 | 52.0 | 4.43e-01 | 98.6% | 71.7% |
| 3246214 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 53.0 | 4.55e-01 | 100.0% | 63.5% |
| 5036964 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 53.0 | 4.44e-01 | 100.0% | 95.2% |
| 3972759 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 52.0 | 4.55e-01 | 100.0% | 91.8% |
| 5077840 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 45.0 | 4.30e-01 | 79.7% | 77.5% |
| 4013356 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.60 | 51.0 | 4.02e-01 | 100.0% | 51.9% |
| 3571184 | 11.1.1.237 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 | 0.59 | 50.0 | 4.42e-01 | 100.0% | 71.8% |
| 3909323 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 50.0 | 4.59e-01 | 98.6% | 77.9% |
| 3815478 | 10.32.1.38 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like | 0.59 | 51.0 | 3.79e-01 | 100.0% | 45.3% |
| 3266615 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 52.0 | 4.25e-01 | 100.0% | 53.8% |
| 3531895 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 49.0 | 4.47e-01 | 100.0% | 69.5% |
| 2995054 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.59 | 50.0 | 3.62e-01 | 100.0% | 77.0% |
| 3532490 | 11.1.1.877 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, MG2, A2M_BRD, MG4 | 0.59 | 50.0 | 2.95e-01 | 98.6% | 12.6% |
| 3489038 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.59 | 45.0 | 3.73e-01 | 85.5% | 49.2% |
| 3540487 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.58 | 49.0 | 4.52e-01 | 98.6% | 76.8% |
| 3526348 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.33e-01 | 98.6% | 68.6% |
| 4028536 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.58 | 51.0 | 4.48e-01 | 100.0% | 67.0% |
| 3258529 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 50.0 | 4.51e-01 | 100.0% | 78.0% |
| 5056360 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 49.0 | 4.49e-01 | 98.6% | 98.9% |
| 5039342 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.58 | 50.0 | 3.99e-01 | 100.0% | 53.1% |
| 3722018 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.57 | 49.0 | 4.07e-01 | 100.0% | 61.5% |
| 3963538 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.57 | 46.0 | 4.08e-01 | 100.0% | 61.0% |
| 4947655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 48.0 | 4.40e-01 | 98.6% | 81.1% |
| 3775361 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 47.0 | 4.18e-01 | 95.7% | 67.6% |
| 3929117 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.57 | 48.0 | 4.24e-01 | 100.0% | 65.5% |
| 3712315 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 43.0 | 3.37e-01 | 85.5% | 41.8% |
| 5045669 | 10.20.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease | 0.57 | 49.0 | 4.16e-01 | 100.0% | 63.3% |
| 4001217 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 47.0 | 4.21e-01 | 95.7% | 71.0% |
| 3265251 | 5095.1.1.0 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen | 0.56 | 49.0 | 4.25e-01 | 100.0% | 62.7% |
| 3821939 | 10.32.1.76 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_gal-bd | 0.56 | 45.0 | 4.36e-01 | 100.0% | 80.0% |
| 5009898 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 47.0 | 4.58e-01 | 98.6% | 88.0% |
| 4026174 | 5095.1.1.1 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 | 0.55 | 47.0 | 3.93e-01 | 100.0% | 54.6% |
| 3008273 | 11.1.1.72 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NEAT | 0.54 | 43.0 | 3.59e-01 | 92.8% | 62.7% |
| 3476498 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.54 | 45.0 | 3.78e-01 | 100.0% | 80.0% |
D3
medium
residues 156-217
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j5uA02 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.76 | 52.0 | 4.72e-01 | 100.0% | 53.6% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.74 | 66.0 | 5.18e-01 | 96.8% | 100.0% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.72 | 63.0 | 5.48e-01 | 98.4% | 94.7% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 50.0 | 4.21e-01 | 100.0% | 46.7% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 48.0 | 4.06e-01 | 100.0% | 45.2% |
| 1p3cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 46.0 | 3.95e-01 | 100.0% | 43.8% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 50.0 | 4.50e-01 | 100.0% | 61.2% |
| 1b12C01 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.61 | 45.0 | 3.79e-01 | 83.9% | 86.0% |
| 1wxrA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 54.0 | 3.54e-01 | 100.0% | 26.1% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 51.0 | 4.30e-01 | 100.0% | 57.0% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.56 | 42.0 | 3.65e-01 | 85.5% | 51.6% |
| 6eziA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 49.0 | 4.45e-01 | 100.0% | 100.0% |
| 3bzcA05 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 3.76e-01 | 83.9% | 81.2% |
| 1r6jA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 48.0 | 4.40e-01 | 100.0% | 98.8% |
| 1uewA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 46.0 | 3.79e-01 | 98.4% | 83.3% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 40.0 | 3.73e-01 | 100.0% | 63.9% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.51 | 43.0 | 2.75e-01 | 100.0% | 57.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4053143 | 1.1.5.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 | 0.72 | 52.0 | 4.19e-01 | 100.0% | 40.0% |
| 3820836 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.72 | 56.0 | 5.02e-01 | 98.4% | 61.2% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.71 | 62.0 | 5.17e-01 | 98.4% | 82.6% |
| 3950458 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.70 | 53.0 | 3.79e-01 | 100.0% | 28.3% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 59.0 | 5.74e-01 | 96.8% | 95.7% |
| 4215822 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.67 | 52.0 | 5.03e-01 | 96.8% | 74.3% |
| 1030933 | 1.1.7.29 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel | 0.64 | 50.0 | 4.44e-01 | 100.0% | 58.4% |
| 3165269 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.60 | 54.0 | 3.49e-01 | 100.0% | 23.6% |
| 3200626 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.59 | 41.0 | 2.95e-01 | 100.0% | 23.0% |
| 3964570 | 1.1.5.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 | 0.59 | 53.0 | 3.42e-01 | 100.0% | 54.2% |
| 2141907 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.54 | 48.0 | 3.40e-01 | 100.0% | 34.2% |
| 4946709 | 1.1.7.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO | 0.54 | 48.0 | 3.72e-01 | 100.0% | 72.7% |
| 3561342 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.54 | 46.0 | 3.66e-01 | 98.4% | 66.7% |
| 3949524 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.54 | 45.0 | 3.13e-01 | 98.4% | 27.2% |
| 3886633 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.53 | 47.0 | 3.92e-01 | 100.0% | 81.8% |
| 4295509 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.53 | 46.0 | 3.08e-01 | 98.4% | 27.2% |
| 3503861 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.53 | 45.0 | 3.84e-01 | 100.0% | 86.4% |
| 4253790 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.53 | 44.0 | 3.09e-01 | 98.4% | 30.0% |
| 3594376 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.51 | 42.0 | 3.71e-01 | 93.5% | 94.7% |
| 3946057 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.51 | 43.0 | 3.03e-01 | 98.4% | 33.2% |
| 3973629 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 42.0 | 3.07e-01 | 98.4% | 32.2% |
| 3492939 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.50 | 41.0 | 3.60e-01 | 98.4% | 86.7% |
D4
medium
residues 218-275
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xetB00 | 2.60.40.2070 | Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain | 0.56 | 38.0 | 3.33e-01 | 86.2% | 46.6% |
| 5eyaF00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 38.0 | 3.54e-01 | 75.9% | 96.1% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.52 | 43.0 | 2.69e-01 | 100.0% | 50.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4883786 | 1043.1.1.1 ↗ | beta complex topology › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › CoV_S1_C | 0.63 | 41.0 | 4.60e-01 | 98.3% | 100.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.62 | 50.0 | 5.01e-01 | 93.1% | 98.3% |
| 4266375 | 4.11.1.4 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › RuBisCo_chap_C | 0.55 | 42.0 | 3.18e-01 | 84.5% | 47.3% |
| 3820836 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.55 | 47.0 | 4.16e-01 | 100.0% | 65.9% |
| 3975917 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.53 | 41.0 | 3.60e-01 | 89.7% | 73.0% |