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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00348

Bact-Vir

S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00348

Identity

Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-77
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.82 73.0 5.22e-01 100.0% 38.7%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.81 72.0 6.16e-01 100.0% 75.9%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.77 65.0 5.02e-01 100.0% 42.1%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 66.0 6.33e-01 100.0% 84.1%
4jvtA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.77 53.0 5.87e-01 78.2% 97.6%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.74 52.0 5.20e-01 74.5% 71.9%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.74 64.0 5.61e-01 100.0% 64.7%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.73 53.0 5.44e-01 81.8% 86.3%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 59.0 5.33e-01 92.7% 70.5%
4jfcA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.70 50.0 5.01e-01 76.4% 75.0%
2hw5A02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.68 48.0 4.75e-01 76.4% 71.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3232340 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.89 79.0 5.28e-01 100.0% 27.0%
3638386 603.1.1.111 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N 0.84 71.0 5.69e-01 94.5% 48.6%
3669330 604.1.1.148 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N 0.83 66.0 5.73e-01 92.7% 56.5%
3539169 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.81 72.0 4.95e-01 100.0% 29.7%
3518051 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.77 65.0 4.55e-01 100.0% 90.5%
5055566 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.76 66.0 5.24e-01 100.0% 51.3%
3492279 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.76 63.0 5.00e-01 100.0% 45.2%
4832964 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.75 66.0 5.10e-01 100.0% 45.5%
3280086 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 61.0 4.37e-01 100.0% 31.7%