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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00362
Bact-VirS2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00362
Identity
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 60.0 | 6.44e-01 | 98.4% | 98.1% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.77 | 60.0 | 5.95e-01 | 85.2% | 93.8% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 58.0 | 5.71e-01 | 80.3% | 76.6% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.75 | 63.0 | 4.86e-01 | 96.7% | 43.0% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.71 | 60.0 | 5.69e-01 | 96.7% | 81.1% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 61.0 | 5.02e-01 | 100.0% | 97.3% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.69 | 54.0 | 5.09e-01 | 83.6% | 76.7% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 54.0 | 5.78e-01 | 83.6% | 100.0% |
| 2qywA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.68 | 59.0 | 5.10e-01 | 96.7% | 62.1% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.67 | 60.0 | 4.48e-01 | 98.4% | 64.8% |
| 3h1nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 57.0 | 4.57e-01 | 96.7% | 54.2% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.66 | 56.0 | 5.13e-01 | 96.7% | 87.8% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 49.0 | 4.93e-01 | 85.2% | 81.7% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 54.0 | 5.10e-01 | 100.0% | 79.5% |
| 4fppB01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.64 | 57.0 | 5.49e-01 | 100.0% | 87.3% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 50.0 | 4.72e-01 | 96.7% | 73.0% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 48.0 | 3.87e-01 | 95.1% | 46.7% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.57 | 50.0 | 4.42e-01 | 98.4% | 68.9% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 42.0 | 3.59e-01 | 82.0% | 51.5% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.53 | 41.0 | 3.72e-01 | 91.8% | 83.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3807205 | 109.4.1.1264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16 | 0.83 | 76.0 | 5.24e-01 | 100.0% | 32.6% |
| 4952853 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.80 | 72.0 | 6.16e-01 | 100.0% | 69.5% |
| 4946087 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.76 | 59.0 | 4.66e-01 | 86.9% | 41.6% |
| 3841109 | 192.29.1.293 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SHCBP_N | 0.75 | 58.0 | 4.91e-01 | 83.6% | 53.0% |
| 3486786 | 165.3.1.0 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › Phenylalanine zipper › Phenylalanine zipper | 0.74 | 60.0 | 6.30e-01 | 95.1% | 100.0% |
| 3475201 | 3652.1.1.2 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › STAR_dimer | 0.71 | 56.0 | 5.73e-01 | 90.2% | 88.3% |
| 3685493 | 605.2.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › DUF7785 | 0.71 | 59.0 | 5.28e-01 | 96.7% | 65.9% |
| 3350539 | 192.23.1.6 ↗ | alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Med10 | 0.70 | 61.0 | 5.47e-01 | 96.7% | 71.8% |
| 5082565 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.69 | 58.0 | 5.66e-01 | 100.0% | 92.9% |
| 4817720 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 55.0 | 3.62e-01 | 98.4% | 21.8% |
| 3194557 | 3922.1.1.232 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF1977 | 0.65 | 50.0 | 4.32e-01 | 90.2% | 51.4% |