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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00370
Bact-VirS2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00370
Identity
- Kingdom:
- phage
Quality
70.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-56
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.73 | 53.0 | 3.98e-01 | 78.6% | 40.7% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.71 | 52.0 | 4.87e-01 | 78.6% | 70.0% |
| 2vklA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.71 | 53.0 | 4.78e-01 | 80.4% | 87.0% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.69 | 51.0 | 4.75e-01 | 82.1% | 67.6% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.69 | 58.0 | 4.55e-01 | 96.4% | 87.1% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.66 | 56.0 | 4.38e-01 | 100.0% | 76.0% |
| 2f48A03 | 1.10.10.480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 | 0.65 | 46.0 | 4.22e-01 | 75.0% | 92.0% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 54.0 | 4.39e-01 | 96.4% | 84.1% |
| 2chnB03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.64 | 57.0 | 3.98e-01 | 100.0% | 48.9% |
| 1hk3A03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.64 | 45.0 | 3.86e-01 | 75.0% | 71.7% |
| 4ig1A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.64 | 53.0 | 3.39e-01 | 100.0% | 36.0% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.63 | 55.0 | 4.82e-01 | 100.0% | 97.7% |
| 8ai9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 50.0 | 4.17e-01 | 91.1% | 61.5% |
| 3dfgA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 40.0 | 4.28e-01 | 75.0% | 79.2% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 4.14e-01 | 75.0% | 84.1% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.61 | 44.0 | 3.20e-01 | 80.4% | 85.7% |
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 3.23e-01 | 89.3% | 20.2% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 48.0 | 4.36e-01 | 96.4% | 100.0% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.60 | 52.0 | 4.46e-01 | 96.4% | 96.6% |
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.60 | 44.0 | 3.15e-01 | 82.1% | 88.1% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.59 | 48.0 | 4.15e-01 | 85.7% | 93.9% |
| 1ybzA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.59 | 52.0 | 4.70e-01 | 98.2% | 93.4% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 4.03e-01 | 75.0% | 100.0% |
| 3c1dA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.79e-01 | 75.0% | 80.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3598903 | 1038.1.1.0 ↗ | alpha complex topology › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain | 0.86 | 68.0 | 3.69e-01 | 83.9% | 5.9% |
| 5040578 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.84 | 74.0 | 7.02e-01 | 96.4% | 95.4% |
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.81 | 58.0 | 5.87e-01 | 76.8% | 80.0% |
| 3744774 | 109.4.1.447 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4K_N | 0.78 | 70.0 | 4.12e-01 | 100.0% | 16.9% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.77 | 56.0 | 5.05e-01 | 76.8% | 64.0% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.75 | 54.0 | 4.69e-01 | 76.8% | 56.5% |
| 3560313 | 109.4.1.141 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MRP-S27 | 0.74 | 56.0 | 3.38e-01 | 82.1% | 14.0% |
| None | — | 0.73 | 55.0 | 3.40e-01 | 82.1% | 14.8% | |
| 3434008 | 3860.1.1.168 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › DUF668 | 0.72 | 57.0 | 4.31e-01 | 89.3% | 80.0% |
| 3341807 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.70 | 60.0 | 4.90e-01 | 100.0% | 78.2% |
| 3198009 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.69 | 60.0 | 5.30e-01 | 100.0% | 91.8% |
| 3682134 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 52.0 | 5.11e-01 | 82.1% | 81.7% |
| 3828970 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.68 | 59.0 | 5.02e-01 | 100.0% | 93.7% |
| 4946497 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 55.0 | 3.81e-01 | 92.9% | 50.0% |
| 3641056 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.67 | 50.0 | 4.29e-01 | 83.9% | 53.7% |
| 3545138 | 3990.1.1.3 ↗ | few secondary structure elements › Zinc finger domain in TOPLESS related protein 2 (TPR2) › Zinc finger domain in TOPLESS related protein 2 (TPR2) › Zinc finger domain in TOPLESS related protein 2 (TPR2) › WDR47_COR | 0.66 | 58.0 | 5.41e-01 | 98.2% | 91.4% |
| 4992790 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.65 | 50.0 | 4.32e-01 | 89.3% | 81.1% |
| 3303408 | 109.59.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain | 0.64 | 48.0 | 4.65e-01 | 83.9% | 80.0% |
| 3605439 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.64 | 56.0 | 5.23e-01 | 98.2% | 97.1% |
| 3214955 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 50.0 | 2.96e-01 | 87.5% | 34.9% |
| 3811258 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.63 | 47.0 | 3.69e-01 | 83.9% | 42.3% |
| 4168631 | 101.1.6.20 ↗ | alpha arrays › HTH › HTH › TrpR › PF28388 | 0.61 | 49.0 | 5.18e-01 | 87.5% | 100.0% |
| 4269306 | 101.1.1.287 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF28388 | 0.59 | 47.0 | 4.91e-01 | 87.5% | 100.0% |
| 3882191 | 101.1.2.639 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28388 | 0.59 | 43.0 | 4.78e-01 | 78.6% | 100.0% |
D2
high
residues 65-135
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 63.0 | 4.57e-01 | 98.6% | 64.7% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.67 | 58.0 | 4.40e-01 | 95.8% | 55.4% |
| 4l8oA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 55.0 | 4.17e-01 | 95.8% | 62.2% |