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S2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00408
Bact-VirS2_012_000_R2_scaffold_18_prodigal-single.1__X__X__00408
Identity
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-63
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g2aA02 | 1.20.58.1690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 54.0 | 4.80e-01 | 80.7% | 100.0% |
| 8gpvA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.73 | 56.0 | 4.34e-01 | 84.2% | 40.3% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.72 | 60.0 | 5.09e-01 | 94.7% | 99.0% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 60.0 | 4.84e-01 | 96.5% | 77.0% |
| 1cgnA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.71 | 60.0 | 4.71e-01 | 96.5% | 77.4% |
| 6a3kA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.68 | 57.0 | 4.48e-01 | 96.5% | 76.0% |
| 5mmjb02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 47.0 | 4.91e-01 | 73.7% | 82.7% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 40.0 | 4.19e-01 | 70.2% | 65.4% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.67 | 45.0 | 3.66e-01 | 70.2% | 59.3% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.67 | 56.0 | 4.72e-01 | 96.5% | 89.2% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 53.0 | 3.89e-01 | 84.2% | 60.6% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 49.0 | 4.35e-01 | 84.2% | 94.3% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.65 | 55.0 | 4.88e-01 | 100.0% | 100.0% |
| 6t0bc02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.65 | 53.0 | 3.78e-01 | 96.5% | 52.9% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.64 | 54.0 | 4.47e-01 | 96.5% | 75.5% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.64 | 51.0 | 4.02e-01 | 93.0% | 63.1% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 52.0 | 4.43e-01 | 100.0% | 97.1% |
| 4g10A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 49.0 | 3.83e-01 | 94.7% | 66.9% |
| 2eapA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.59 | 39.0 | 3.65e-01 | 70.2% | 55.8% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 40.0 | 3.82e-01 | 70.2% | 92.6% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.59 | 42.0 | 4.28e-01 | 80.7% | 100.0% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.58 | 48.0 | 4.77e-01 | 96.5% | 100.0% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 37.0 | 3.37e-01 | 70.2% | 55.4% |
| 4hfvA01 | 1.20.1440.330 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 37.0 | 3.02e-01 | 75.4% | 49.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001284 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.76 | 67.0 | 4.86e-01 | 100.0% | 41.9% |
| 3528134 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.75 | 55.0 | 4.94e-01 | 82.5% | 56.2% |
| 4143416 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.74 | 55.0 | 4.36e-01 | 82.5% | 39.1% |
| 3330505 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.74 | 63.0 | 5.27e-01 | 96.5% | 94.0% |
| 3032603 | 109.13.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › MgtE N-terminal domain-like › MgtE N-terminal domain-like › MgtE_N | 0.73 | 56.0 | 4.37e-01 | 84.2% | 41.3% |
| 3185412 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 59.0 | 4.95e-01 | 98.2% | 66.7% |
| 4031198 | 604.15.1.2 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › Sbi-IV | 0.71 | 53.0 | 5.37e-01 | 80.7% | 94.5% |
| 3503129 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.69 | 47.0 | 4.09e-01 | 70.2% | 81.2% |
| 3240455 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 51.0 | 4.50e-01 | 84.2% | 94.4% |
| 4167208 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.68 | 54.0 | 5.32e-01 | 87.7% | 91.7% |
| 3828970 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.65 | 56.0 | 4.83e-01 | 100.0% | 92.6% |
| 3815035 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.65 | 56.0 | 4.28e-01 | 98.2% | 59.3% |
| 3682134 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 45.0 | 4.48e-01 | 75.4% | 90.0% |
| 4237259 | 531.2.1.2 ↗ | alpha arrays › Domains of FliG › Middle domain of FliG › Middle domain of FliG › MgtE_N | 0.61 | 51.0 | 4.81e-01 | 96.5% | 81.4% |
| 4379330 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.61 | 53.0 | 5.21e-01 | 94.7% | 96.7% |
| 3389774 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.60 | 39.0 | 3.97e-01 | 73.7% | 67.3% |
| 3964543 | 601.2.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2 | 0.57 | 46.0 | 3.80e-01 | 100.0% | 76.8% |
| 4423609 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 46.0 | 2.86e-01 | 91.2% | 28.2% |
| 4040004 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.56 | 46.0 | 2.87e-01 | 91.2% | 28.2% |
| 4992487 | 316.2.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like | 0.54 | 39.0 | 3.06e-01 | 78.9% | 78.6% |
| 3530727 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.54 | 36.0 | 3.56e-01 | 73.7% | 65.0% |
D2
medium
residues 71-104_122-135_201-225
Domain cluster:
representative
D3
medium
residues 105-121_136-200
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 38.0 | 4.20e-01 | 95.1% | 72.7% |
| 2dk5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 38.0 | 4.23e-01 | 92.7% | 80.3% |
| 3g3zA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 37.0 | 4.11e-01 | 95.1% | 81.2% |
| 4i5lB01 | 1.10.238.230 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.56 | 40.0 | 3.76e-01 | 74.4% | 83.0% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 35.0 | 3.87e-01 | 95.1% | 81.5% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.67e-01 | 97.6% | 61.0% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.52 | 44.0 | 3.86e-01 | 95.1% | 78.7% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.50 | 32.0 | 3.26e-01 | 75.6% | 66.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3304970 | 8002.1.1.1 ↗ | alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c | 0.66 | 50.0 | 4.43e-01 | 80.5% | 91.3% |
| 4188673 | 241.12.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 | 0.60 | 51.0 | 3.98e-01 | 98.8% | 79.0% |
| 3408060 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.60 | 36.0 | 3.98e-01 | 100.0% | 75.4% |
| 5060703 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 38.0 | 4.16e-01 | 97.6% | 83.1% |
| 5056495 | 101.1.2.128 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2582 | 0.58 | 33.0 | 3.72e-01 | 93.9% | 75.0% |
| 4993094 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 34.0 | 3.77e-01 | 98.8% | 76.9% |
| 5010592 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.56 | 37.0 | 3.27e-01 | 93.9% | 45.8% |
| 5076263 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.88e-01 | 97.6% | 72.9% |
| 5063200 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.78e-01 | 100.0% | 71.8% |
| 3837644 | 101.1.2.454 ↗ | alpha arrays › HTH › HTH › winged helix domain › FAM91_N | 0.53 | 34.0 | 3.03e-01 | 96.3% | 45.0% |
| 3619865 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.52 | 44.0 | 3.66e-01 | 93.9% | 72.4% |
| 3709021 | 304.34.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases › NDK | 0.51 | 41.0 | 3.44e-01 | 96.3% | 90.9% |
| 4963050 | 3352.1.1.50 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DUF2298 | 0.50 | 38.0 | 2.44e-01 | 84.1% | 60.2% |
| 3482804 | 10.28.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 | 0.50 | 44.0 | 3.70e-01 | 100.0% | 95.2% |
| 5024114 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.50 | 37.0 | 3.10e-01 | 96.3% | 45.7% |