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S2_012_000_R2_scaffold_20_prodigal-single.1__X__X__00291
Bact-VirS2_012_000_R2_scaffold_20_prodigal-single.1__X__X__00291
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-78
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 36.0 | 2.71e-01 | 93.3% | 21.9% |
| 5aa5E00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.61 | 47.0 | 2.84e-01 | 84.0% | 92.5% |
| 3mfdA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.60 | 46.0 | 3.28e-01 | 82.7% | 92.4% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.59 | 47.0 | 4.13e-01 | 88.0% | 98.2% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 44.0 | 3.56e-01 | 80.0% | 53.5% |
| 1e3dB00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.58 | 44.0 | 2.70e-01 | 82.7% | 91.8% |
| 7p7cC02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.58 | 43.0 | 2.88e-01 | 82.7% | 100.0% |
| 4wj7D00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 42.0 | 3.63e-01 | 82.7% | 82.1% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 31.0 | 3.29e-01 | 80.0% | 62.1% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 4.18e-01 | 92.0% | 93.2% |
| 3s27B01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 3.32e-01 | 77.3% | 72.9% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 35.0 | 2.87e-01 | 89.3% | 35.2% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.53 | 41.0 | 3.70e-01 | 88.0% | 69.0% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.53 | 42.0 | 3.69e-01 | 90.7% | 77.1% |
| 3nvoA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.52 | 41.0 | 3.42e-01 | 85.3% | 80.9% |
| 1g1bA00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.51 | 43.0 | 3.37e-01 | 93.3% | 89.6% |
| 4csqA00 | 2.30.29.190 | Mainly Beta › Roll › PH-domain like › | 0.51 | 37.0 | 3.28e-01 | 77.3% | 77.0% |
| 3sk2A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 39.0 | 3.31e-01 | 90.7% | 48.5% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.50 | 40.0 | 3.48e-01 | 94.7% | 53.5% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 3.42e-01 | 92.0% | 62.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483861 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.65 | 52.0 | 5.12e-01 | 88.0% | 95.0% |
| 5041541 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.65 | 48.0 | 4.55e-01 | 78.7% | 84.4% |
| 3322470 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.64 | 48.0 | 3.60e-01 | 81.3% | 68.2% |
| 3804986 | 809.1.1.5 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 | 0.63 | 49.0 | 4.70e-01 | 84.0% | 91.8% |
| 3817626 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.62 | 47.0 | 3.60e-01 | 81.3% | 66.7% |
| 3269422 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.62 | 45.0 | 3.14e-01 | 78.7% | 25.2% |
| 4182548 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.61 | 45.0 | 4.18e-01 | 78.7% | 93.7% |
| 1169087 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 49.0 | 3.15e-01 | 90.7% | 93.4% |
| 3639264 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.61 | 46.0 | 2.85e-01 | 82.7% | 99.4% |
| 4932331 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.60 | 48.0 | 4.47e-01 | 88.0% | 71.6% |
| 3274001 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 44.0 | 2.94e-01 | 84.0% | 96.4% |
| 4963980 | 300.1.1.24 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DICT | 0.58 | 42.0 | 3.45e-01 | 78.7% | 86.0% |
| 3407402 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.58 | 45.0 | 4.26e-01 | 89.3% | 74.7% |
| 4998500 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.57 | 45.0 | 4.14e-01 | 89.3% | 75.2% |
| 4979564 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 43.0 | 4.44e-01 | 82.7% | 90.0% |
| 3918252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 33.0 | 4.14e-01 | 84.0% | 100.0% |
| 3407394 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 45.0 | 4.08e-01 | 89.3% | 65.7% |
| 5061264 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.54 | 39.0 | 3.90e-01 | 77.3% | 87.5% |
| 1140832 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.54 | 39.0 | 4.24e-01 | 86.7% | 96.7% |
| 3183639 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 41.0 | 2.65e-01 | 85.3% | 99.3% |
| 3944566 | 809.1.1.10 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › EndoU_bacteria | 0.52 | 38.0 | 4.16e-01 | 77.3% | 100.0% |
| 3969147 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.52 | 36.0 | 3.81e-01 | 93.3% | 83.1% |
| 3726314 | 511.1.1.2 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 | 0.51 | 35.0 | 2.83e-01 | 72.0% | 96.9% |
| 5049640 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 34.0 | 3.41e-01 | 70.7% | 81.0% |
| 4042507 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.50 | 42.0 | 2.78e-01 | 97.3% | 78.9% |