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S2_012_000_R2_scaffold_26_prodigal-single.1__X__X__00168
Bact-VirS2_012_000_R2_scaffold_26_prodigal-single.1__X__X__00168
Identity
- Kingdom:
- phage
Quality
64.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 91-136
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x7bA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 44.0 | 3.06e-01 | 87.0% | 21.2% |
| 4kvxA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 44.0 | 3.13e-01 | 87.0% | 22.4% |
| 3drxB03 | 3.30.70.2000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 40.0 | 3.94e-01 | 95.7% | 58.8% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.62 | 51.0 | 3.79e-01 | 100.0% | 43.4% |
| 1mhmB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.61 | 40.0 | 3.85e-01 | 95.7% | 57.4% |
| 3tm4A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 43.0 | 2.94e-01 | 80.4% | 34.3% |
| 3fn2A00 | 3.30.2200.10 | Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 | 0.59 | 41.0 | 3.26e-01 | 80.4% | 34.0% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 40.0 | 3.40e-01 | 95.7% | 40.7% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 40.0 | 3.61e-01 | 100.0% | 48.6% |
| 1yqyA01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.59 | 48.0 | 3.23e-01 | 100.0% | 36.3% |
| 3ep6B01 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.58 | 38.0 | 3.97e-01 | 95.7% | 75.6% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 40.0 | 3.38e-01 | 89.1% | 40.5% |
| 5tvoB00 | 3.30.360.50 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase | 0.57 | 37.0 | 3.46e-01 | 95.7% | 52.5% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 38.0 | 3.06e-01 | 95.7% | 34.0% |
| 1s9cC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 43.0 | 3.12e-01 | 89.1% | 51.7% |
| 2hljA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 44.0 | 3.25e-01 | 93.5% | 60.6% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 45.0 | 3.06e-01 | 100.0% | 65.5% |
| 3lw6A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 44.0 | 2.87e-01 | 95.7% | 70.5% |
| 2g1dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 40.0 | 3.28e-01 | 93.5% | 39.8% |
| 3b5iB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 2.72e-01 | 89.1% | 33.1% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.53 | 41.0 | 3.20e-01 | 95.7% | 39.0% |
| 5optY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 2.98e-01 | 95.7% | 32.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279576 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.69 | 46.0 | 3.00e-01 | 87.0% | 15.6% |
| 4413553 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.66 | 46.0 | 2.65e-01 | 87.0% | 6.9% |
| 4030314 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.66 | 52.0 | 3.41e-01 | 91.3% | 82.3% |
| 4065577 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.65 | 46.0 | 2.95e-01 | 87.0% | 15.2% |
| 3955909 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.65 | 46.0 | 2.87e-01 | 95.7% | 13.5% |
| 5036897 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 47.0 | 3.40e-01 | 91.3% | 26.9% |
| 4328706 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.63 | 44.0 | 2.90e-01 | 87.0% | 15.3% |
| 4619396 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.61 | 45.0 | 2.90e-01 | 82.6% | 88.1% |
| 3559795 | 2003.1.5.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 | 0.60 | 45.0 | 2.96e-01 | 82.6% | 31.2% |
| 4654301 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.59 | 40.0 | 3.36e-01 | 95.7% | 38.8% |
| 3517277 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.59 | 46.0 | 3.48e-01 | 95.7% | 31.9% |
| 3290862 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.59 | 45.0 | 2.84e-01 | 84.8% | 36.3% |
| 4067759 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.58 | 41.0 | 3.39e-01 | 100.0% | 38.9% |
| 3512337 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.58 | 45.0 | 4.06e-01 | 93.5% | 60.0% |
| 3401548 | 221.1.1.69 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM | 0.58 | 46.0 | 3.73e-01 | 95.7% | 65.0% |
| 4032703 | 327.10.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NI | 0.58 | 46.0 | 4.00e-01 | 100.0% | 54.1% |
| 4273189 | 327.18.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › DNA_pol3_a_NI | 0.58 | 46.0 | 3.99e-01 | 100.0% | 54.1% |
| 3410684 | 10.12.1.51 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_2 | 0.58 | 45.0 | 2.83e-01 | 100.0% | 48.2% |
| 4948343 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.57 | 37.0 | 3.08e-01 | 95.7% | 34.1% |
| 3200416 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.57 | 48.0 | 3.48e-01 | 97.8% | 92.9% |
| 4951657 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.57 | 36.0 | 3.04e-01 | 93.5% | 35.3% |
| 5051923 | 304.8.1.12 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 | 0.56 | 39.0 | 3.62e-01 | 93.5% | 56.7% |
| 4551888 | 304.48.1.96 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › BLUF | 0.56 | 45.0 | 2.56e-01 | 100.0% | 18.1% |
| 5048085 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 37.0 | 3.03e-01 | 93.5% | 34.0% |
| 5046881 | 328.8.1.0 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 | 0.54 | 43.0 | 3.29e-01 | 89.1% | 80.9% |
| 4659996 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.54 | 43.0 | 2.82e-01 | 100.0% | 48.4% |
| 3957247 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.53 | 42.0 | 2.85e-01 | 100.0% | 52.6% |
| 4272869 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 38.0 | 3.46e-01 | 89.1% | 55.4% |
| 3722521 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 38.0 | 2.62e-01 | 89.1% | 64.5% |
| 3423942 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.52 | 38.0 | 3.42e-01 | 93.5% | 52.0% |
| 3211300 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.52 | 41.0 | 3.19e-01 | 95.7% | 65.8% |
| 3975784 | 310.3.1.10 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HofO | 0.52 | 37.0 | 3.06e-01 | 93.5% | 41.2% |
| 4440700 | 327.18.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › DciA | 0.51 | 42.0 | 3.49e-01 | 100.0% | 55.8% |
| 5054451 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.51 | 36.0 | 2.94e-01 | 80.4% | 53.0% |
| 3680527 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.51 | 39.0 | 3.38e-01 | 93.5% | 53.3% |
| 4655985 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.50 | 39.0 | 2.39e-01 | 89.1% | 69.4% |