←Back to structures
S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00128
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00128
Identity
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-17_171-274
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2odhA02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.55 | 40.0 | 4.05e-01 | 75.4% | 96.4% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 46.0 | 4.10e-01 | 93.9% | 72.2% |
| 4g3wA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 45.0 | 4.27e-01 | 93.9% | 84.7% |
| 2k31A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 44.0 | 4.07e-01 | 93.9% | 86.6% |
| 4bwiB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 44.0 | 3.80e-01 | 96.5% | 81.1% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 44.0 | 3.97e-01 | 96.5% | 74.7% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 44.0 | 3.86e-01 | 96.5% | 76.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3991064 | 319.1.1.11 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SGS | 0.53 | 34.0 | 3.26e-01 | 76.3% | 53.2% |
| 3308989 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 44.0 | 3.84e-01 | 90.4% | 78.2% |
| 6845 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.52 | 46.0 | 3.98e-01 | 100.0% | 66.8% |
| 3686189 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 44.0 | 3.69e-01 | 93.9% | 73.0% |
| 3473240 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 46.0 | 4.01e-01 | 100.0% | 78.3% |
| 3698142 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 45.0 | 3.64e-01 | 93.9% | 70.0% |
| 5034119 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 46.0 | 3.86e-01 | 100.0% | 76.5% |
| 4988344 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.51 | 44.0 | 3.86e-01 | 93.9% | 70.6% |
| 4025579 | 2.1.1.86 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 | 0.51 | 37.0 | 3.94e-01 | 74.6% | 95.8% |
| 136833 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.51 | 45.0 | 3.90e-01 | 100.0% | 67.7% |
| 3519116 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 45.0 | 3.90e-01 | 97.4% | 70.3% |
| 1534102 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.50 | 43.0 | 3.53e-01 | 93.9% | 60.7% |
| 4943530 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.75e-01 | 93.9% | 71.4% |
D2
high
residues 20-153
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hbkA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.63 | 30.0 | 3.67e-01 | 76.9% | 68.5% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.60 | 44.0 | 4.10e-01 | 99.3% | 61.8% |
| 2ar0A01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.59 | 49.0 | 4.70e-01 | 87.3% | 94.7% |
| 1abvA00 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.57 | 43.0 | 4.71e-01 | 91.0% | 100.0% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.57 | 42.0 | 3.88e-01 | 97.8% | 59.8% |
| 1f1eA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.56 | 33.0 | 3.22e-01 | 97.8% | 51.0% |
| 1io1A01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.55 | 42.0 | 3.88e-01 | 79.9% | 81.1% |
| 6wy9B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 33.0 | 3.55e-01 | 88.1% | 69.0% |
| 3c7jA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.54 | 41.0 | 4.05e-01 | 79.1% | 97.3% |
| 3rh3A01 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.54 | 33.0 | 3.34e-01 | 99.3% | 60.9% |
| 3rrwB01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.53 | 44.0 | 4.01e-01 | 96.3% | 66.5% |
| 2jokA01 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.53 | 45.0 | 4.18e-01 | 94.0% | 81.1% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 41.0 | 4.00e-01 | 95.5% | 74.2% |
| 2k3oA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.51 | 32.0 | 3.29e-01 | 91.8% | 64.3% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 34.0 | 3.67e-01 | 76.9% | 81.2% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 35.0 | 3.36e-01 | 95.5% | 61.7% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4473906 | 563.1.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.65 | 53.0 | 3.72e-01 | 93.3% | 27.6% |
| 3649559 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.60 | 53.0 | 3.54e-01 | 94.8% | 50.7% |
| 3374179 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.58 | 52.0 | 3.98e-01 | 98.5% | 89.5% |
| 3667987 | 1079.1.1.0 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA | 0.58 | 53.0 | 4.60e-01 | 99.3% | 83.5% |
| 3732853 | 1188.1.1.1 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip | 0.57 | 40.0 | 3.15e-01 | 99.3% | 34.4% |
| 5019571 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.54 | 46.0 | 3.62e-01 | 92.5% | 90.3% |
| 4942452 | 5050.1.1.53 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MarC | 0.53 | 46.0 | 4.06e-01 | 95.5% | 82.4% |
| 4528918 | 1079.1.1.13 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp | 0.53 | 47.0 | 4.30e-01 | 96.3% | 86.3% |
| 4071531 | 1188.1.1.3 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp | 0.53 | 48.0 | 4.30e-01 | 97.8% | 87.0% |
| 5018515 | 5050.1.1.53 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MarC | 0.53 | 46.0 | 4.04e-01 | 95.5% | 86.0% |
| 3288128 | 1079.1.1.7 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › SfLAP | 0.52 | 45.0 | 4.14e-01 | 96.3% | 82.2% |
| 5024277 | 1079.1.1.19 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DUF2162 | 0.52 | 46.0 | 4.03e-01 | 97.8% | 82.5% |
| 3520768 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 47.0 | 4.02e-01 | 99.3% | 82.4% |
| 3635018 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 40.0 | 3.42e-01 | 81.3% | 96.6% |
| 4999057 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.51 | 43.0 | 3.51e-01 | 91.8% | 96.3% |
| 5081351 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 42.0 | 3.44e-01 | 88.1% | 79.1% |
| 3670870 | 5050.1.1.8 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FPN1 | 0.50 | 36.0 | 3.40e-01 | 97.0% | 59.4% |
| 4641463 | 5050.1.1.54 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Mntp | 0.50 | 43.0 | 3.90e-01 | 94.0% | 86.5% |
| 3404969 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.50 | 46.0 | 3.89e-01 | 99.3% | 80.0% |