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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00136

Bact-Vir

S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00136

Identity

Kingdom:
phage

Quality

67.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-158
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 29.0 2.56e-01 81.8% 27.6%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 48.0 4.86e-01 76.1% 86.5%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.67 30.0 2.39e-01 81.8% 20.3%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.66 29.0 2.97e-01 93.2% 42.2%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 49.0 3.37e-01 80.7% 27.1%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 48.0 3.38e-01 79.5% 29.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 51.0 4.38e-01 88.6% 89.3%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 38.0 3.20e-01 85.2% 38.3%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 46.0 4.56e-01 77.3% 80.0%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 42.0 3.62e-01 70.5% 79.9%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 29.0 3.24e-01 81.8% 56.1%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 50.0 4.22e-01 90.9% 76.5%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 47.0 4.06e-01 84.1% 73.0%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 44.0 4.10e-01 76.1% 89.7%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 44.0 4.60e-01 77.3% 100.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 30.0 3.88e-01 71.6% 85.7%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 37.0 3.02e-01 80.7% 36.7%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 48.0 4.47e-01 89.8% 90.1%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.58 51.0 4.20e-01 98.9% 76.8%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 41.0 3.45e-01 72.7% 76.2%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.58 42.0 3.62e-01 78.4% 67.1%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 42.0 4.46e-01 77.3% 88.6%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 45.0 4.02e-01 86.4% 81.1%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 40.0 3.75e-01 86.4% 58.2%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 46.0 3.71e-01 90.9% 92.0%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.57 29.0 2.82e-01 94.3% 40.6%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 4.20e-01 89.8% 80.7%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 38.0 3.62e-01 95.5% 61.5%
3tuoC00 3.10.20.710 Alpha Beta › Roll › Ubiquitin-like (UB roll) › SATB, ubiquitin-like oligomerisation domain 0.54 41.0 4.07e-01 81.8% 87.1%
8oqkA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.78e-01 85.2% 66.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 2.66e-01 80.7% 86.0%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 42.0 2.94e-01 83.0% 86.7%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.76e-01 89.8% 62.0%
2a6hC03 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 44.0 3.63e-01 97.7% 84.4%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 42.0 2.86e-01 90.9% 58.7%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.52 36.0 3.20e-01 72.7% 86.6%
4eo0A00 3.30.110.160 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.52 36.0 3.45e-01 73.9% 80.2%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.51 43.0 3.54e-01 96.6% 88.1%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.62e-01 73.9% 83.1%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.15e-01 77.3% 53.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3574409 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.73 61.0 6.10e-01 100.0% 88.9%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.73 52.0 5.71e-01 87.5% 92.9%
3717452 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.73 64.0 5.78e-01 97.7% 91.7%
3760807 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.71 47.0 2.89e-01 100.0% 12.4%
3208984 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.70 53.0 4.58e-01 89.8% 50.7%
3507630 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.68 50.0 3.39e-01 77.3% 25.6%
3243753 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.66 49.0 4.10e-01 77.3% 85.0%
3916184 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.65 50.0 3.38e-01 80.7% 27.1%
3303997 221.1.1.59 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_4 0.65 49.0 4.21e-01 79.5% 60.7%
4497740 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.64 36.0 4.25e-01 80.7% 81.7%
3394277 221.1.1.168 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B 0.63 48.0 3.34e-01 80.7% 28.8%
4328576 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.62 48.0 4.76e-01 84.1% 80.0%
4263841 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.61 39.0 3.23e-01 78.4% 37.3%
5013584 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 37.0 4.08e-01 79.5% 77.1%
4398495 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.60 50.0 2.94e-01 90.9% 35.2%
3585062 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.60 28.0 3.10e-01 88.6% 55.7%
3786015 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 49.0 2.91e-01 90.9% 36.9%
None — 0.59 38.0 3.22e-01 77.3% 37.4%
4280539 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.59 49.0 2.86e-01 90.9% 38.4%
3600795 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 38.0 3.22e-01 72.7% 40.0%
3233943 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.58 32.0 3.64e-01 87.5% 72.3%
3740687 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 38.0 2.55e-01 93.2% 17.9%
3838435 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 32.0 3.11e-01 86.4% 49.5%
3173843 221.1.1.7 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.58 44.0 4.19e-01 81.8% 83.8%
3715965 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.57 37.0 3.10e-01 73.9% 38.0%
3502373 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.57 35.0 3.36e-01 85.2% 52.4%
3293676 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 45.0 3.41e-01 86.4% 62.3%
3901459 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 3.00e-01 98.9% 30.2%
3164555 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 3.67e-01 83.0% 89.3%
4038272 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 39.0 3.83e-01 71.6% 98.9%
3501234 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 50.0 3.30e-01 95.5% 46.8%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.56 33.0 3.51e-01 73.9% 65.0%
4062936 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 44.0 4.23e-01 88.6% 79.0%
4679943 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.55 38.0 3.13e-01 71.6% 38.8%
1389183 6161.1.1.1 ↗ a+b two layers › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › DUF5517 0.55 44.0 4.44e-01 86.4% 87.2%
3789900 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.55 50.0 4.32e-01 100.0% 66.7%
3927687 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.54 38.0 3.74e-01 72.7% 100.0%
3971108 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 37.0 3.67e-01 83.0% 67.8%
3947893 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.54 43.0 3.88e-01 89.8% 74.6%
3897327 2.1.1.241 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rsm22 0.54 29.0 3.44e-01 83.0% 80.0%
3668333 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 43.0 2.87e-01 87.5% 42.4%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.77e-01 95.5% 51.2%
3705571 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.52e-01 83.0% 63.4%
5054141 2.14.1.0 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.53 28.0 3.64e-01 73.9% 92.0%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 43.0 4.26e-01 88.6% 100.0%
3928452 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 48.0 3.19e-01 100.0% 61.4%
3214114 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.26e-01 87.5% 56.0%
3558463 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 46.0 3.08e-01 98.9% 64.4%
3653604 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 39.0 3.28e-01 80.7% 87.7%
4015753 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 42.0 3.09e-01 92.0% 58.8%
3872321 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 45.0 3.02e-01 97.7% 26.5%
3825338 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.73e-01 92.0% 75.6%
3782077 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.51 38.0 3.25e-01 81.8% 100.0%
None — 0.51 45.0 2.97e-01 97.7% 24.7%
3509080 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.51 39.0 3.04e-01 86.4% 79.6%
3627409 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.51 45.0 3.44e-01 97.7% 71.5%
3799847 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.51 28.0 3.06e-01 80.7% 64.3%
4443502 109.4.1.116 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc 0.50 41.0 2.43e-01 85.2% 12.8%
D2 high residues 230-334
PDB