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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00157
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00157
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-87
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6grrB01 | 3.30.457.10 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain | 0.77 | 67.0 | 5.85e-01 | 100.0% | 81.0% |
| 2k4jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 57.0 | 4.48e-01 | 86.3% | 40.0% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.74 | 53.0 | 4.56e-01 | 78.4% | 61.9% |
| 2o4vA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.71 | 57.0 | 3.38e-01 | 90.2% | 69.8% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.70 | 60.0 | 4.98e-01 | 100.0% | 58.9% |
| 2yadA00 | 3.30.390.150 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.69 | 51.0 | 4.56e-01 | 82.4% | 67.5% |
| 3h5eA00 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.69 | 47.0 | 3.33e-01 | 72.5% | 99.4% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.66 | 56.0 | 4.04e-01 | 98.0% | 43.8% |
| 1kgsA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 4.17e-01 | 88.2% | 77.6% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.65 | 49.0 | 4.19e-01 | 82.4% | 59.0% |
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.65 | 48.0 | 4.03e-01 | 82.4% | 55.4% |
| 4nkbB02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.65 | 52.0 | 4.41e-01 | 92.2% | 54.4% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 52.0 | 3.11e-01 | 90.2% | 100.0% |
| 6phxA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.63 | 52.0 | 3.31e-01 | 98.0% | 95.7% |
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.63 | 51.0 | 3.17e-01 | 94.1% | 50.0% |
| 1w5rA01 | 3.30.2140.10 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase | 0.62 | 50.0 | 3.58e-01 | 96.1% | 69.4% |
| 4aezA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 55.0 | 3.26e-01 | 96.1% | 86.5% |
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.61 | 51.0 | 4.23e-01 | 100.0% | 52.9% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.61 | 53.0 | 4.16e-01 | 100.0% | 73.2% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 50.0 | 4.21e-01 | 96.1% | 60.7% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 3.09e-01 | 96.1% | 100.0% |
| 2edgA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.59 | 47.0 | 3.54e-01 | 90.2% | 73.1% |
| 3rlfF02 | 3.10.650.10 | Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like | 0.58 | 45.0 | 3.89e-01 | 86.3% | 61.0% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.58 | 49.0 | 3.88e-01 | 100.0% | 69.6% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 43.0 | 3.79e-01 | 82.4% | 62.0% |
| 2hqyA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 47.0 | 3.53e-01 | 92.2% | 96.9% |
| 6fucA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 44.0 | 3.76e-01 | 86.3% | 74.4% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.57 | 46.0 | 4.06e-01 | 94.1% | 80.0% |
| 7ewsB02 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.56 | 42.0 | 2.78e-01 | 84.3% | 51.8% |
| 1g1bA00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.56 | 47.0 | 3.37e-01 | 100.0% | 39.6% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 46.0 | 3.43e-01 | 98.0% | 55.3% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 3.58e-01 | 76.5% | 78.5% |
| 1r21A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 42.0 | 3.56e-01 | 98.0% | 87.0% |
| 1avvA00 | 3.30.62.10 | Alpha Beta › 2-Layer Sandwich › Nef Regulatory Factor › Nef Regulatory Factor | 0.52 | 38.0 | 3.23e-01 | 84.3% | 57.6% |
| 3kljA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 37.0 | 3.35e-01 | 86.3% | 75.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4580534 | 241.3.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 | 0.81 | 69.0 | 5.40e-01 | 98.0% | 62.7% |
| 3210934 | 77.3.1.7 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF31062 | 0.79 | 58.0 | 4.55e-01 | 78.4% | 43.8% |
| 3235531 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.79 | 59.0 | 3.75e-01 | 80.4% | 19.6% |
| 3387871 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.77 | 53.0 | 4.09e-01 | 72.5% | 96.5% |
| 135088 | 241.3.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N domain of copper amine oxidase › N domain of copper amine oxidase › Cu_amine_oxidN1 | 0.77 | 67.0 | 5.68e-01 | 100.0% | 79.1% |
| 4981790 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.77 | 57.0 | 4.27e-01 | 82.4% | 85.4% |
| 3306543 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.74 | 58.0 | 5.20e-01 | 84.3% | 67.1% |
| 3589929 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.73 | 52.0 | 3.80e-01 | 78.4% | 85.3% |
| 4814340 | 2004.1.1.134 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Podovirus_Gp16 | 0.73 | 52.0 | 3.41e-01 | 78.4% | 18.3% |
| None | — | 0.72 | 48.0 | 3.25e-01 | 70.6% | 82.2% | |
| 3326520 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.71 | 56.0 | 4.89e-01 | 84.3% | 62.7% |
| 3781848 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.71 | 55.0 | 4.98e-01 | 84.3% | 68.6% |
| 3899940 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.71 | 54.0 | 4.70e-01 | 84.3% | 67.5% |
| 3509095 | 3425.2.1.3 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 | 0.69 | 52.0 | 3.18e-01 | 82.4% | 35.8% |
| 5025277 | 284.1.1.13 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N | 0.69 | 51.0 | 5.04e-01 | 80.4% | 83.6% |
| 3806421 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.69 | 56.0 | 5.20e-01 | 88.2% | 73.8% |
| 2390064 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.69 | 53.0 | 3.55e-01 | 84.3% | 66.3% |
| 3218627 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.68 | 59.0 | 3.89e-01 | 98.0% | 26.0% |
| 3211176 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.68 | 58.0 | 3.67e-01 | 96.1% | 22.0% |
| 3231261 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.67 | 56.0 | 3.58e-01 | 96.1% | 21.2% |
| 3490378 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.66 | 52.0 | 4.48e-01 | 86.3% | 68.8% |
| 3911194 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.66 | 49.0 | 4.27e-01 | 82.4% | 60.0% |
| 3996720 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.65 | 50.0 | 4.53e-01 | 82.4% | 68.6% |
| 3706744 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.65 | 56.0 | 4.19e-01 | 96.1% | 45.6% |
| 4113536 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.65 | 55.0 | 3.95e-01 | 98.0% | 46.9% |
| 3914736 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.65 | 49.0 | 4.57e-01 | 82.4% | 75.4% |
| 1348267 | 292.2.1.5 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 | 0.64 | 52.0 | 4.37e-01 | 92.2% | 52.7% |
| 3494530 | 5.1.4.155 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 | 0.64 | 49.0 | 3.02e-01 | 98.0% | 13.7% |
| 3629602 | 5.1.5.148 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, HELP, Beta-prop_EML | 0.64 | 52.0 | 3.20e-01 | 96.1% | 44.1% |
| 3239717 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.64 | 52.0 | 3.50e-01 | 96.1% | 29.8% |
| 3914165 | 5.1.4.269 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML | 0.63 | 54.0 | 3.25e-01 | 98.0% | 86.4% |
| 3713772 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.62 | 53.0 | 4.60e-01 | 96.1% | 64.6% |
| 3926070 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 54.0 | 3.22e-01 | 96.1% | 80.6% |
| 3307575 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 51.0 | 4.13e-01 | 96.1% | 56.0% |
| 4234211 | 3111.1.1.0 ↗ | beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain | 0.59 | 45.0 | 4.07e-01 | 98.0% | 89.4% |