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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00160
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00160
Identity
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
rep: ON529853.1__UTC29533.1__BAMBUS_04590__00450__D5-81
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13773.12 best | DUF4170 | 64.8 | 8.10e-18 | 100.0% | 95.0% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mheA00 | 3.30.70.2400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF13773, DUF4170 | 0.76 | 65.0 | 6.00e-01 | 100.0% | 77.0% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.73 | 50.0 | 4.59e-01 | 71.4% | 81.7% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 56.0 | 4.78e-01 | 100.0% | 82.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.66 | 52.0 | 4.55e-01 | 100.0% | 55.4% |
| 3k5iA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.66 | 50.0 | 3.39e-01 | 82.1% | 35.9% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 56.0 | 4.52e-01 | 100.0% | 86.0% |
| 8gk4C02 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.65 | 55.0 | 4.67e-01 | 94.6% | 100.0% |
| 1qltA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.65 | 54.0 | 3.66e-01 | 98.2% | 48.1% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 56.0 | 4.70e-01 | 100.0% | 69.1% |
| 1ixhA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 53.0 | 4.00e-01 | 100.0% | 51.6% |
| 7mftG02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 47.0 | 3.00e-01 | 83.9% | 29.0% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.62 | 44.0 | 4.51e-01 | 100.0% | 88.0% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.61 | 51.0 | 3.50e-01 | 100.0% | 45.5% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.61 | 43.0 | 3.01e-01 | 78.6% | 44.3% |
| 3mc2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.61 | 50.0 | 3.71e-01 | 100.0% | 44.8% |
| 1pzxA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.60 | 48.0 | 3.72e-01 | 87.5% | 77.0% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 49.0 | 4.27e-01 | 100.0% | 76.5% |
| 1wvfA03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.60 | 51.0 | 3.43e-01 | 100.0% | 73.2% |
| 3e0mC01 | 3.30.1060.10 | Alpha Beta › 2-Layer Sandwich › Peptide Methionine Sulfoxide Reductase; Chain A › Peptide methionine sulphoxide reductase MsrA | 0.59 | 50.0 | 3.66e-01 | 100.0% | 59.8% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.59 | 50.0 | 4.25e-01 | 94.6% | 100.0% |
| 1zghA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.59 | 45.0 | 3.33e-01 | 87.5% | 38.2% |
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 46.0 | 4.46e-01 | 89.3% | 78.1% |
| 3r5xD02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 41.0 | 3.08e-01 | 80.4% | 100.0% |
| 2zuoA06 | 2.30.30.560 | Mainly Beta › Roll › SH3 type barrels. › Major vault protein, N-terminal structural repeat domain | 0.56 | 40.0 | 4.16e-01 | 100.0% | 84.3% |
| 2pokA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 47.0 | 3.45e-01 | 100.0% | 97.1% |
| 3b49A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.55 | 47.0 | 3.29e-01 | 100.0% | 53.9% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 41.0 | 3.28e-01 | 83.9% | 38.0% |
| 2debA03 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.54 | 44.0 | 2.92e-01 | 100.0% | 98.2% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 45.0 | 4.10e-01 | 98.2% | 87.7% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 44.0 | 4.08e-01 | 100.0% | 70.9% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.54 | 46.0 | 3.10e-01 | 100.0% | 65.4% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.53 | 43.0 | 3.91e-01 | 100.0% | 88.6% |
| 6ztgA01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.53 | 43.0 | 4.06e-01 | 100.0% | 100.0% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.53 | 42.0 | 3.98e-01 | 85.7% | 78.8% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.53 | 38.0 | 3.78e-01 | 100.0% | 76.7% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.17e-01 | 89.3% | 46.4% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 43.0 | 4.08e-01 | 100.0% | 78.9% |
| 6dgiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 40.0 | 3.03e-01 | 83.9% | 49.3% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1146593 | 304.14.1.2 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › DUF4170 | 0.76 | 65.0 | 6.00e-01 | 100.0% | 77.0% |
| 2559787 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.65 | 58.0 | 5.14e-01 | 100.0% | 97.5% |
| 3274364 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.65 | 48.0 | 4.97e-01 | 100.0% | 93.9% |
| 4927706 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.64 | 55.0 | 4.61e-01 | 100.0% | 94.9% |
| 3929041 | 221.1.1.69 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNX17-27-31_F1_FERM | 0.63 | 55.0 | 4.51e-01 | 100.0% | 72.4% |
| 3278021 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.63 | 49.0 | 2.92e-01 | 87.5% | 32.7% |
| 4223323 | 304.44.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C | 0.62 | 53.0 | 4.59e-01 | 98.2% | 100.0% |
| 5010788 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.62 | 53.0 | 3.53e-01 | 96.4% | 37.8% |
| 3300115 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.62 | 53.0 | 4.41e-01 | 100.0% | 72.4% |
| 4642338 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.62 | 49.0 | 4.99e-01 | 100.0% | 92.5% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 51.0 | 4.55e-01 | 100.0% | 64.7% |
| 5053097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 51.0 | 4.41e-01 | 100.0% | 89.5% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.61 | 52.0 | 4.76e-01 | 100.0% | 73.3% |
| 3721482 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.61 | 51.0 | 3.33e-01 | 100.0% | 38.9% |
| 3205440 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.60 | 46.0 | 2.86e-01 | 85.7% | 43.6% |
| 4008166 | 3115.1.1.10 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 | 0.60 | 51.0 | 4.37e-01 | 100.0% | 61.1% |
| 4933881 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.60 | 50.0 | 3.34e-01 | 98.2% | 34.4% |
| 4011512 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.59 | 50.0 | 3.24e-01 | 100.0% | 57.0% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.59 | 52.0 | 3.20e-01 | 100.0% | 62.3% |
| 3570975 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.59 | 49.0 | 3.71e-01 | 100.0% | 47.1% |
| 4109626 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.59 | 48.0 | 3.25e-01 | 100.0% | 22.4% |
| 3397457 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.58 | 44.0 | 4.33e-01 | 100.0% | 76.7% |
| 5068045 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 49.0 | 4.56e-01 | 100.0% | 98.7% |
| 3512390 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.58 | 49.0 | 4.39e-01 | 100.0% | 97.6% |
| 5065205 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 48.0 | 3.71e-01 | 100.0% | 99.3% |
| 1693387 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.58 | 45.0 | 4.09e-01 | 100.0% | 60.9% |
| 4942869 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.57 | 46.0 | 3.47e-01 | 100.0% | 35.3% |
| 160731 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.57 | 48.0 | 4.44e-01 | 100.0% | 97.3% |
| 5049152 | 109.4.1.3609 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › JAB | 0.57 | 46.0 | 2.83e-01 | 100.0% | 23.5% |
| 5042598 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.57 | 50.0 | 4.27e-01 | 100.0% | 81.1% |
| 3282710 | 2492.1.1.35 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 | 0.57 | 46.0 | 3.49e-01 | 100.0% | 58.2% |
| 3797466 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.56 | 47.0 | 3.32e-01 | 98.2% | 38.0% |
| 3593924 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.56 | 46.0 | 3.76e-01 | 100.0% | 64.2% |
| 3799886 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.55 | 46.0 | 4.31e-01 | 96.4% | 100.0% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 44.0 | 4.41e-01 | 100.0% | 88.3% |
| 1002449 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.55 | 41.0 | 3.23e-01 | 83.9% | 37.7% |
| 3597641 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 46.0 | 4.27e-01 | 100.0% | 98.7% |
| 3774427 | 304.8.1.54 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 | 0.54 | 45.0 | 3.94e-01 | 100.0% | 77.9% |
| 3996298 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 45.0 | 4.11e-01 | 100.0% | 96.2% |
| 3277566 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 44.0 | 4.16e-01 | 100.0% | 96.0% |
| 3390315 | 304.8.1.54 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 | 0.54 | 44.0 | 4.13e-01 | 100.0% | 96.0% |
| 4029586 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.53 | 46.0 | 3.43e-01 | 100.0% | 72.7% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.53 | 42.0 | 4.08e-01 | 100.0% | 80.0% |
| 3251650 | 10.2.1.84 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin | 0.53 | 46.0 | 3.37e-01 | 100.0% | 74.8% |
| 3333290 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.52 | 46.0 | 3.26e-01 | 100.0% | 66.1% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.52 | 39.0 | 2.31e-01 | 89.3% | 36.5% |
| 3248836 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 36.0 | 2.72e-01 | 83.9% | 27.1% |