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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00237

Bact-Vir

S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00237

Identity

Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-65
PDB
CATH (74)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.87 73.0 6.64e-01 100.0% 70.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.74 53.0 5.39e-01 100.0% 78.9%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.67e-01 100.0% 92.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.73 61.0 6.04e-01 100.0% 90.5%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 4.87e-01 100.0% 49.6%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.70 64.0 5.54e-01 100.0% 71.1%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.40e-01 100.0% 94.1%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.69 41.0 4.24e-01 100.0% 62.1%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 4.66e-01 100.0% 55.2%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 47.0 4.28e-01 75.0% 96.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.40e-01 100.0% 96.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.06e-01 100.0% 72.4%
3lkmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 55.0 4.18e-01 100.0% 87.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 48.0 5.09e-01 100.0% 92.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.19e-01 95.0% 100.0%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.65 56.0 3.75e-01 100.0% 28.9%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.14e-01 98.3% 84.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.33e-01 100.0% 98.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.64 49.0 5.15e-01 100.0% 100.0%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.64 55.0 4.50e-01 100.0% 64.1%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 5.04e-01 95.0% 95.6%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 54.0 4.36e-01 100.0% 48.8%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 54.0 3.95e-01 100.0% 43.9%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 47.0 3.45e-01 80.0% 57.2%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 46.0 3.57e-01 80.0% 57.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 48.0 4.90e-01 88.3% 86.4%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 4.84e-01 100.0% 71.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 52.0 4.43e-01 100.0% 56.7%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.33e-01 96.7% 60.9%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 3.89e-01 100.0% 39.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.69e-01 100.0% 88.7%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.06e-01 100.0% 64.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 49.0 4.87e-01 100.0% 90.3%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 50.0 4.11e-01 100.0% 59.0%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.59 45.0 3.66e-01 100.0% 44.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.69e-01 100.0% 80.6%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 47.0 3.76e-01 98.3% 77.3%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.87e-01 100.0% 90.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 5.09e-01 100.0% 96.7%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.58 44.0 3.61e-01 100.0% 44.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.89e-01 100.0% 98.3%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 48.0 3.94e-01 100.0% 61.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.82e-01 100.0% 91.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.58e-01 100.0% 81.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.84e-01 100.0% 93.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.78e-01 100.0% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.72e-01 100.0% 88.1%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 40.0 4.14e-01 86.7% 80.7%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 4.15e-01 98.3% 71.2%
3ia8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.58e-01 100.0% 89.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.59e-01 100.0% 83.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.62e-01 100.0% 98.3%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.58e-01 100.0% 90.7%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.69e-01 100.0% 100.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 47.0 4.01e-01 98.3% 58.7%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.46e-01 88.3% 82.7%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.66e-01 98.3% 100.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.57e-01 100.0% 57.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.55 47.0 4.19e-01 100.0% 78.9%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.54e-01 100.0% 87.6%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.84e-01 98.3% 75.4%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 46.0 4.28e-01 100.0% 80.5%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 45.0 3.81e-01 100.0% 56.9%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 41.0 2.96e-01 91.7% 69.6%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.37e-01 90.0% 94.1%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.16e-01 88.3% 76.2%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.17e-01 88.3% 88.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.71e-01 100.0% 86.4%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.26e-01 91.7% 90.4%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.14e-01 91.7% 77.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 45.0 3.17e-01 100.0% 39.9%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.51 26.0 2.76e-01 75.0% 50.9%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.50 43.0 3.24e-01 100.0% 50.9%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.01e-01 100.0% 28.4%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.88 74.0 6.83e-01 100.0% 72.0%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.88 67.0 6.49e-01 100.0% 73.8%
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 67.0 6.07e-01 100.0% 63.7%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 69.0 6.70e-01 100.0% 80.0%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.82 67.0 6.45e-01 100.0% 77.9%
3593222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 62.0 5.58e-01 100.0% 61.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.80 68.0 5.80e-01 100.0% 58.9%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.79 65.0 5.40e-01 100.0% 53.0%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.78 68.0 5.78e-01 100.0% 60.0%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.78 67.0 5.92e-01 100.0% 65.9%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.78 68.0 5.99e-01 100.0% 67.1%
4564484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 55.0 6.23e-01 95.0% 100.0%
4034317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 66.0 6.49e-01 100.0% 85.7%
4033484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 65.0 6.40e-01 100.0% 84.4%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.77 65.0 6.20e-01 100.0% 78.6%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.77 65.0 5.46e-01 100.0% 56.0%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 64.0 5.61e-01 100.0% 62.2%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 65.0 6.05e-01 100.0% 75.7%
3821287 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.75 68.0 5.10e-01 100.0% 44.3%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.46e-01 100.0% 57.3%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 67.0 5.52e-01 100.0% 59.0%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 64.0 5.23e-01 100.0% 52.7%
5010832 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.74 67.0 5.84e-01 100.0% 71.9%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 66.0 5.43e-01 100.0% 57.4%
4400596 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.73 65.0 4.76e-01 100.0% 39.4%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 62.0 5.25e-01 100.0% 57.0%
3575581 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.71 64.0 4.63e-01 100.0% 37.6%
3679362 4.1.1.351 beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.71 62.0 5.60e-01 100.0% 100.0%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.71 55.0 5.28e-01 100.0% 72.9%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.83e-01 100.0% 78.7%
3677829 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 56.0 4.59e-01 100.0% 47.3%
3251559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.71e-01 98.3% 100.0%
3315166 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 59.0 5.14e-01 100.0% 61.1%
2755606 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 63.0 4.18e-01 100.0% 27.0%
5032461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.69e-01 100.0% 86.2%
3738626 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.69 61.0 4.62e-01 100.0% 44.1%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 59.0 5.00e-01 100.0% 66.0%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 4.51e-01 100.0% 53.0%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 54.0 5.25e-01 100.0% 80.9%
5038570 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 55.0 4.50e-01 100.0% 48.3%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.37e-01 100.0% 86.2%
3550248 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 54.0 4.60e-01 100.0% 56.0%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.91e-01 100.0% 34.6%
3167531 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 54.0 4.29e-01 100.0% 45.9%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 55.0 4.63e-01 100.0% 57.1%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 53.0 4.61e-01 100.0% 59.0%
3521217 1.1.5.34 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 0.63 47.0 3.40e-01 80.0% 54.3%
3393809 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.63 49.0 3.46e-01 86.7% 99.5%
3847699 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.63 51.0 3.43e-01 100.0% 38.6%
3591144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 3.98e-01 96.7% 38.0%
3791476 206.1.1.13 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.63 51.0 3.51e-01 100.0% 43.1%
3450257 4.1.1.150 beta barrels › SH3 › SH3 › SH3 › DUF3123 0.62 54.0 4.68e-01 98.3% 66.3%
3576437 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.54e-01 100.0% 58.0%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.69e-01 100.0% 83.3%
3626691 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 53.0 4.52e-01 100.0% 58.0%
3481413 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 51.0 3.54e-01 100.0% 47.5%
3902169 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.18e-01 96.7% 56.8%
3933337 109.4.1.2535 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Alpha_kinase 0.62 50.0 3.09e-01 100.0% 23.8%
158939 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 53.0 4.84e-01 100.0% 71.6%
3911035 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 53.0 4.02e-01 100.0% 85.2%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 53.0 5.03e-01 100.0% 82.7%
3559960 2006.1.6.66 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.62 49.0 4.78e-01 100.0% 81.4%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.61 49.0 4.66e-01 100.0% 76.0%
3517415 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 49.0 4.87e-01 100.0% 84.6%
3797477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.23e-01 100.0% 93.8%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.27e-01 100.0% 51.8%
3505437 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 52.0 4.66e-01 100.0% 68.2%
4118011 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 52.0 4.70e-01 100.0% 70.6%
3447254 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.60 48.0 3.34e-01 98.3% 25.0%
3188711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.50e-01 96.7% 67.1%
3370389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.91e-01 100.0% 90.8%
4018667 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 51.0 4.14e-01 100.0% 50.4%
165654 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 49.0 4.70e-01 100.0% 83.8%
3572647 4.1.1.227 beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.59 50.0 4.41e-01 100.0% 64.4%
3484618 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 50.0 4.71e-01 100.0% 77.3%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 47.0 3.86e-01 100.0% 46.7%
3462061 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 48.0 3.38e-01 96.7% 27.9%
3436414 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.58 47.0 3.32e-01 98.3% 26.7%
4012002 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.84e-01 100.0% 85.7%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.58 48.0 3.98e-01 100.0% 50.0%
4445574 4.1.1.361 beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 0.57 47.0 3.30e-01 98.3% 57.9%
3810562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.57e-01 100.0% 81.3%
3393358 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 45.0 4.00e-01 98.3% 58.9%
3449628 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.56 45.0 3.73e-01 98.3% 47.8%
3787905 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 48.0 4.62e-01 98.3% 84.3%
4447762 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.56 48.0 3.59e-01 100.0% 89.9%
3172122 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 48.0 4.80e-01 100.0% 100.0%
2114387 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.53 46.0 3.43e-01 100.0% 76.9%
3813872 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 46.0 2.98e-01 100.0% 99.0%
4438983 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 42.0 3.77e-01 98.3% 58.9%
5039871 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 40.0 2.71e-01 100.0% 20.8%
D2 high residues 80-126
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04434.23 best SWIM 28.0 1.70e-06 61.7% 81.6%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.72 49.0 3.20e-01 70.2% 70.2%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.68 58.0 4.80e-01 95.7% 77.1%
1vjnA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.67 49.0 3.23e-01 78.7% 37.6%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.67 45.0 2.87e-01 70.2% 67.4%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.65 49.0 4.14e-01 85.1% 67.8%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.64 47.0 3.66e-01 80.9% 46.3%
3h04A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 53.0 3.32e-01 95.7% 33.5%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 52.0 3.50e-01 93.6% 25.8%
1x3bA00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.64 47.0 3.34e-01 80.9% 29.5%
1qh5A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.63 51.0 3.27e-01 100.0% 16.9%
4hvtA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 53.0 3.23e-01 100.0% 33.0%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 48.0 3.05e-01 91.5% 32.8%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 52.0 3.16e-01 100.0% 43.5%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 52.0 3.23e-01 100.0% 42.6%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 43.0 3.25e-01 78.7% 71.2%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.59 40.0 2.58e-01 70.2% 16.6%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 46.0 3.30e-01 89.4% 89.7%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 47.0 2.90e-01 91.5% 35.8%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.02e-01 100.0% 89.9%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.02e-01 100.0% 87.9%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.87e-01 100.0% 96.1%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.57 46.0 3.74e-01 100.0% 60.4%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.96e-01 85.1% 68.3%
2az4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 48.0 2.96e-01 95.7% 98.2%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 44.0 3.52e-01 87.2% 72.9%
5ay6A01 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.55 37.0 2.60e-01 70.2% 47.4%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.26e-01 95.7% 87.5%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 40.0 3.02e-01 80.9% 35.7%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 46.0 3.13e-01 100.0% 74.9%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.54 39.0 3.04e-01 76.6% 49.6%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 45.0 2.91e-01 100.0% 47.0%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.32e-01 76.6% 77.0%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.16e-01 83.0% 61.2%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.25e-01 100.0% 39.8%
2etvA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 43.0 3.11e-01 93.6% 99.3%
2ayaA00 3.30.300.150 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V 0.51 39.0 3.09e-01 97.9% 46.9%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.51 40.0 3.87e-01 97.9% 81.0%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 42.0 2.57e-01 97.9% 52.6%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 2.91e-01 100.0% 80.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974908 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.75 53.0 3.61e-01 74.5% 32.5%
3933100 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 50.0 4.33e-01 70.2% 58.6%
4179811 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.73 49.0 5.22e-01 70.2% 97.5%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 48.0 3.97e-01 70.2% 56.2%
3933654 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 49.0 5.06e-01 76.6% 84.4%
3933098 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 45.0 4.06e-01 70.2% 64.6%
3303919 59.1.1.16 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › PF30948 0.66 46.0 3.68e-01 74.5% 63.2%
3669824 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.65 48.0 4.61e-01 80.9% 72.7%
4105997 247.1.1.5 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.65 51.0 3.21e-01 93.6% 16.5%
3925754 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.63 55.0 3.99e-01 100.0% 42.2%
3254676 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.63 43.0 2.98e-01 72.3% 27.2%
3907024 260.1.1.1 a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.63 42.0 2.56e-01 70.2% 11.2%
3652949 5.1.5.85 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.62 55.0 3.37e-01 100.0% 31.0%
3744814 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.62 46.0 3.79e-01 80.9% 66.7%
3700743 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.62 46.0 4.08e-01 83.0% 54.3%
5030040 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.62 53.0 3.33e-01 100.0% 42.9%
3624239 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 51.0 4.13e-01 93.6% 67.8%
3940203 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 51.0 4.13e-01 100.0% 91.0%
3232445 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.20e-01 97.9% 65.0%
4201790 247.1.1.5 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.60 48.0 3.05e-01 93.6% 17.2%
3707684 243.11.1.0 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.60 45.0 4.11e-01 83.0% 63.1%
4937423 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.91e-01 93.6% 49.4%
3565424 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 49.0 3.74e-01 100.0% 76.0%
3475699 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 49.0 3.90e-01 100.0% 79.0%
5074419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 40.0 3.66e-01 70.2% 70.8%
3493400 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 48.0 3.88e-01 100.0% 81.0%
3940847 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.58 48.0 3.82e-01 100.0% 73.6%
4940212 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.58 43.0 4.43e-01 95.7% 91.1%
3909375 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 47.0 3.54e-01 100.0% 60.0%
5068438 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 40.0 3.05e-01 76.6% 44.6%
3233672 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 44.0 3.67e-01 97.9% 52.0%
4998507 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 44.0 4.24e-01 89.4% 88.9%
3579887 5.1.5.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.55 48.0 2.96e-01 97.9% 17.2%
4389625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.55 42.0 4.10e-01 95.7% 76.4%
None 0.54 44.0 3.38e-01 100.0% 63.1%
5037884 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 36.0 2.92e-01 72.3% 49.1%
4106342 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 44.0 3.73e-01 100.0% 85.6%
3533183 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 43.0 3.57e-01 100.0% 77.0%
3783302 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.53 44.0 2.94e-01 100.0% 33.6%
None 0.53 43.0 3.47e-01 100.0% 80.0%
3532957 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 41.0 3.16e-01 100.0% 57.9%
3422058 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.52 41.0 2.68e-01 95.7% 21.9%
3166885 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.54e-01 100.0% 27.1%