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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00344
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00344
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-100
Domain cluster:
rep: MN270266.1__QGJ85858.1__X__00053__D136-224
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13280.13 best | WYL | 30.2 | 4.90e-07 | 74.2% | 92.9% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.76 | 51.0 | 5.96e-01 | 78.4% | 98.5% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 5.59e-01 | 77.3% | 94.5% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 48.0 | 5.13e-01 | 78.4% | 79.5% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 42.0 | 5.01e-01 | 72.2% | 87.7% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 44.0 | 5.30e-01 | 79.4% | 98.4% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 42.0 | 4.25e-01 | 74.2% | 59.0% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 48.0 | 4.14e-01 | 78.4% | 46.4% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 47.0 | 5.26e-01 | 79.4% | 95.8% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 51.0 | 5.28e-01 | 79.4% | 93.3% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.66 | 48.0 | 4.77e-01 | 78.4% | 71.2% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.65 | 54.0 | 4.65e-01 | 87.6% | 93.8% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 5.01e-01 | 72.2% | 92.1% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 52.0 | 4.68e-01 | 86.6% | 73.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 39.0 | 4.61e-01 | 76.3% | 96.8% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 37.0 | 4.34e-01 | 77.3% | 90.8% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.60 | 44.0 | 4.32e-01 | 77.3% | 79.2% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.60 | 44.0 | 3.67e-01 | 78.4% | 49.7% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 40.0 | 3.39e-01 | 73.2% | 76.5% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 41.0 | 3.42e-01 | 76.3% | 77.1% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 41.0 | 3.13e-01 | 81.4% | 91.9% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 37.0 | 3.17e-01 | 75.3% | 93.2% |
| 1zvcA00 | 2.40.480.10 | Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like | 0.52 | 36.0 | 3.03e-01 | 71.1% | 62.0% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 36.0 | 3.65e-01 | 73.2% | 92.6% |
ECOD (77)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.91 | 70.0 | 7.33e-01 | 88.7% | 86.7% |
| 3942912 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.88 | 73.0 | 7.84e-01 | 88.7% | 98.8% |
| 3978997 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.87 | 73.0 | 7.39e-01 | 88.7% | 88.4% |
| 3972550 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.86 | 72.0 | 7.19e-01 | 93.8% | 85.0% |
| 3279470 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.86 | 70.0 | 7.28e-01 | 93.8% | 91.1% |
| 3959770 | 4.31.1.0 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 | 0.86 | 70.0 | 7.32e-01 | 88.7% | 92.2% |
| 4545520 | 4.7.1.7 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL | 0.86 | 71.0 | 7.61e-01 | 90.7% | 100.0% |
| 3289944 | 4.1.1.323 ↗ | beta barrels › SH3 › SH3 › SH3 › WYL | 0.86 | 71.0 | 7.39e-01 | 93.8% | 93.3% |
| 3953109 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.85 | 72.0 | 7.34e-01 | 92.8% | 91.6% |
| 3280641 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.84 | 71.0 | 7.09e-01 | 93.8% | 87.0% |
| 4870495 | 304.169.1.1 ↗ | a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL | 0.83 | 70.0 | 6.69e-01 | 93.8% | 78.7% |
| 2866962 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.83 | 69.0 | 6.67e-01 | 93.8% | 78.7% |
| 3283097 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.80 | 70.0 | 6.68e-01 | 93.8% | 80.9% |
| 4976092 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 55.0 | 5.74e-01 | 78.4% | 77.8% |
| 4251101 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 55.0 | 5.85e-01 | 79.4% | 88.2% |
| 5010832 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.74 | 55.0 | 5.75e-01 | 78.4% | 91.0% |
| 4358168 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.74 | 56.0 | 5.38e-01 | 80.4% | 70.0% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 45.0 | 5.58e-01 | 76.3% | 100.0% |
| 150293 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.73 | 56.0 | 5.62e-01 | 79.4% | 84.4% |
| 3713334 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.73 | 45.0 | 5.41e-01 | 74.2% | 100.0% |
| 147797 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.73 | 45.0 | 5.20e-01 | 70.1% | 88.2% |
| 4596087 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.72 | 52.0 | 5.81e-01 | 76.3% | 96.0% |
| 4938919 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 43.0 | 5.11e-01 | 74.2% | 89.2% |
| 5025498 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.71 | 52.0 | 5.41e-01 | 77.3% | 86.7% |
| 3510786 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.71 | 43.0 | 5.07e-01 | 77.3% | 90.8% |
| 3704395 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 45.0 | 5.29e-01 | 75.3% | 98.4% |
| 3901117 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 44.0 | 3.61e-01 | 72.2% | 34.4% |
| 4932404 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.70 | 50.0 | 4.18e-01 | 78.4% | 44.4% |
| 3829476 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 51.0 | 4.15e-01 | 76.3% | 42.9% |
| 3876680 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 45.0 | 4.53e-01 | 75.3% | 64.0% |
| 165654 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.70 | 48.0 | 5.34e-01 | 77.3% | 93.2% |
| 3642926 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.69 | 49.0 | 3.95e-01 | 74.2% | 43.2% |
| 3739064 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 45.0 | 5.29e-01 | 75.3% | 100.0% |
| 3431172 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.68 | 51.0 | 3.82e-01 | 79.4% | 44.1% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.68 | 47.0 | 5.37e-01 | 74.2% | 98.6% |
| 3328647 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.68 | 52.0 | 5.56e-01 | 86.6% | 91.8% |
| 4087011 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 59.0 | 5.95e-01 | 92.8% | 97.9% |
| 4024274 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.68 | 49.0 | 4.81e-01 | 79.4% | 69.5% |
| 5055039 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.67 | 47.0 | 4.16e-01 | 77.3% | 50.0% |
| 3932647 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 46.0 | 4.84e-01 | 77.3% | 80.0% |
| 4250193 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.67 | 48.0 | 4.96e-01 | 78.4% | 80.0% |
| 4936051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 38.0 | 4.86e-01 | 71.1% | 100.0% |
| 3934278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 4.69e-01 | 78.4% | 67.8% |
| 3185321 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.66 | 47.0 | 5.17e-01 | 78.4% | 94.7% |
| 3821287 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.66 | 53.0 | 4.67e-01 | 85.6% | 60.7% |
| 3409460 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 4.80e-01 | 78.4% | 77.1% |
| 3738626 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.66 | 53.0 | 4.63e-01 | 86.6% | 69.0% |
| 3608562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 3.98e-01 | 75.3% | 90.6% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 46.0 | 3.97e-01 | 73.2% | 96.0% |
| 4272564 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.65 | 52.0 | 5.10e-01 | 86.6% | 82.4% |
| 4542692 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.99e-01 | 76.3% | 92.9% |
| 4118011 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.65 | 48.0 | 5.08e-01 | 78.4% | 95.3% |
| 3167531 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.65 | 52.0 | 4.69e-01 | 86.6% | 71.9% |
| 3370389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 43.0 | 4.97e-01 | 75.3% | 100.0% |
| 4055974 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.64 | 48.0 | 4.45e-01 | 79.4% | 70.4% |
| 4936914 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.64 | 43.0 | 4.27e-01 | 77.3% | 63.8% |
| 4400596 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.64 | 52.0 | 4.37e-01 | 86.6% | 54.4% |
| 3770803 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.64 | 48.0 | 4.68e-01 | 80.4% | 75.5% |
| 3575581 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.64 | 51.0 | 4.29e-01 | 86.6% | 52.1% |
| 4668960 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 51.0 | 4.94e-01 | 86.6% | 79.1% |
| 4022025 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.63 | 46.0 | 4.00e-01 | 79.4% | 50.3% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 45.0 | 4.73e-01 | 79.4% | 84.7% |
| 3842363 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.63 | 47.0 | 4.56e-01 | 80.4% | 76.4% |
| 3477401 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.62 | 51.0 | 3.78e-01 | 88.7% | 50.6% |
| 3278698 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 44.0 | 4.33e-01 | 75.3% | 92.4% |
| 3719860 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 49.0 | 4.67e-01 | 86.6% | 79.1% |
| 3188712 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.61 | 44.0 | 4.43e-01 | 76.3% | 88.0% |
| 4110324 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.60 | 44.0 | 4.72e-01 | 77.3% | 96.2% |
| 3924619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 51.0 | 4.75e-01 | 99.0% | 75.8% |
| 3836393 | 9.2.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg | 0.55 | 39.0 | 3.14e-01 | 75.3% | 92.4% |
| 4014830 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 31.0 | 3.89e-01 | 81.4% | 100.0% |
| 3399368 | 9.14.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › DUF7042 | 0.53 | 37.0 | 3.40e-01 | 73.2% | 96.3% |
| 4060896 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.52 | 36.0 | 2.92e-01 | 74.2% | 84.2% |
| 3648015 | 9.1.1.21 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Cyclin_D1_bind | 0.51 | 38.0 | 3.20e-01 | 79.4% | 82.9% |
| 4949036 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.51 | 27.0 | 3.54e-01 | 76.3% | 100.0% |
| 4963369 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.51 | 35.0 | 2.97e-01 | 72.2% | 100.0% |
| 3237402 | 5084.4.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › DUF7042 | 0.51 | 36.0 | 3.19e-01 | 74.2% | 81.4% |