←Back to structures
S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00375
Bact-VirS2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00375
Identity
- Kingdom:
- phage
Quality
96.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 30-91
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.71 | 62.0 | 5.08e-01 | 100.0% | 67.5% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.71 | 56.0 | 4.97e-01 | 85.5% | 62.5% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.70 | 57.0 | 4.81e-01 | 93.5% | 55.1% |
| 2yayA02 | 1.20.1670.10 | Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase | 0.68 | 59.0 | 4.66e-01 | 100.0% | 97.8% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 59.0 | 5.70e-01 | 100.0% | 94.3% |
| 1ihgA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 58.0 | 4.48e-01 | 98.4% | 45.5% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.67 | 58.0 | 4.31e-01 | 100.0% | 57.2% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.66 | 40.0 | 3.88e-01 | 75.8% | 56.7% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.65 | 57.0 | 4.54e-01 | 100.0% | 87.4% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 56.0 | 4.68e-01 | 100.0% | 73.5% |
| 2ifuD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 52.0 | 3.43e-01 | 100.0% | 21.1% |
| 3u5nA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.63 | 50.0 | 4.09e-01 | 88.7% | 45.8% |
| 3ddmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 46.0 | 3.69e-01 | 83.9% | 92.0% |
| 1dk8A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.59 | 51.0 | 4.67e-01 | 100.0% | 77.6% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.59 | 50.0 | 4.29e-01 | 100.0% | 83.3% |
| 5mlc900 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 47.0 | 4.05e-01 | 95.2% | 81.3% |
| 7ccmB01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.57 | 46.0 | 3.59e-01 | 93.5% | 52.4% |
| 4fxdA05 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.56 | 50.0 | 4.05e-01 | 100.0% | 64.1% |
| 4kn7D01 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.56 | 49.0 | 3.88e-01 | 100.0% | 82.7% |
| 1odfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 43.0 | 2.87e-01 | 85.5% | 72.9% |
| 5tprA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.55 | 42.0 | 3.02e-01 | 87.1% | 26.9% |
| 4gxzD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 44.0 | 3.21e-01 | 88.7% | 68.8% |
| 1q16B03 | 1.10.3650.10 | Mainly Alpha › Orthogonal Bundle › nitrate reductase domain fold › nitrate reductase domain like | 0.53 | 46.0 | 4.28e-01 | 95.2% | 94.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3693382 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.74 | 68.0 | 4.92e-01 | 100.0% | 72.5% |
| 3736053 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 63.0 | 5.57e-01 | 100.0% | 77.9% |
| 3204506 | 603.3.1.0 ↗ | alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein | 0.70 | 60.0 | 4.20e-01 | 98.4% | 46.2% |
| 3250153 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 57.0 | 3.89e-01 | 100.0% | 41.7% |
| 5007869 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.65 | 57.0 | 4.89e-01 | 100.0% | 77.0% |
| 4854403 | 3281.1.2.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh | 0.61 | 52.0 | 3.44e-01 | 100.0% | 28.1% |
| 3781900 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.61 | 53.0 | 3.84e-01 | 100.0% | 48.3% |
| 3230351 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.60 | 50.0 | 3.80e-01 | 100.0% | 44.2% |
| 3891331 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.59 | 50.0 | 3.90e-01 | 93.5% | 50.0% |
| 3776754 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.59 | 49.0 | 4.87e-01 | 96.8% | 98.5% |
| 3941884 | 109.51.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › TssA helical domains › TssA helical domains › ImpA_N | 0.58 | 50.0 | 3.71e-01 | 98.4% | 91.8% |
| 3476112 | 109.23.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › EMC6 | 0.53 | 43.0 | 3.81e-01 | 88.7% | 68.9% |
| 3955584 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.52 | 45.0 | 3.44e-01 | 100.0% | 54.2% |
| 5079588 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.50 | 42.0 | 3.75e-01 | 93.5% | 73.3% |