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S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00435

Bact-Vir

S2_018_000_R2_scaffold_9_prodigal-single.1__X__X__00435

Identity

Kingdom:
phage

Quality

66.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.62 33.0 3.71e-01 76.1% 66.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.57 41.0 4.13e-01 92.4% 74.7%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.85e-01 77.2% 61.6%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 40.0 2.74e-01 80.4% 69.9%
2hfzA01 3.30.70.2840 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Flavivirus RNA-directed RNA polymerase, thumb domain 0.53 30.0 3.08e-01 81.5% 56.2%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.52 43.0 2.96e-01 90.2% 61.9%
2itmB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 39.0 2.93e-01 80.4% 40.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589882 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.63 24.0 3.31e-01 79.3% 66.0%
4986861 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 40.0 4.07e-01 70.7% 84.3%
4945650 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.58 41.0 4.06e-01 98.9% 68.0%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.58 40.0 3.00e-01 70.7% 99.6%
5072826 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.58 39.0 3.96e-01 89.1% 70.8%
4399128 7581.1.1.30 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.57 41.0 2.80e-01 76.1% 76.2%
1840644 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 41.0 3.85e-01 77.2% 61.6%
4946011 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 37.0 3.47e-01 76.1% 53.0%
5053531 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 3.84e-01 80.4% 61.7%
3350168 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 40.0 3.74e-01 76.1% 65.0%
4944871 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 38.0 3.57e-01 77.2% 56.7%
3684953 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.54 37.0 2.44e-01 79.3% 16.9%
4973552 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 37.0 3.61e-01 79.3% 66.7%
4016553 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.52 36.0 3.49e-01 73.9% 96.4%
3761694 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 28.0 2.83e-01 78.3% 51.6%
4976198 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.51 35.0 3.63e-01 80.4% 78.8%
D2 medium residues 93-148
PDB